Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4454551..4454819 | Replicon | chromosome |
| Accession | NZ_CP015138 | ||
| Organism | Escherichia coli strain Ecol_732 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4454589..4454691 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4454551..4454819 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4X18_RS21925 | 4451709..4453148 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| A4X18_RS21930 | 4453265..4453501 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A4X18_RS21935 | 4453606..4453797 | + | 192 | WP_001296140.1 | YebW family protein | - |
| A4X18_RS21940 | 4453798..4454454 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 4454551..4454819 | + | 269 | - | - | Antitoxin |
| - | 4454589..4454691 | - | 103 | - | - | Toxin |
| A4X18_RS21950 | 4454849..4455190 | - | 342 | WP_000976472.1 | YebY family protein | - |
| A4X18_RS21955 | 4455203..4456075 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| A4X18_RS21960 | 4456079..4456453 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| A4X18_RS21965 | 4456592..4456822 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A4X18_RS21970 | 4456924..4457580 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| A4X18_RS21975 | 4457604..4458266 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62491 NZ_CP015138:c4454691-4454589 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT62491 NZ_CP015138:4454551-4454819 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
