Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4453511..4453593 Replicon chromosome
Accession NZ_CP015137
Organism Dickeya solani IPO 2222

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4453513..4453593 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4453511..4453593 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A4U42_RS19120 4449375..4450472 - 1098 WP_022633455.1 HDOD domain-containing protein -
A4U42_RS19125 4450463..4451578 - 1116 WP_022633456.1 sensor histidine kinase -
A4U42_RS19130 4451571..4452695 - 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
A4U42_RS19135 4453062..4453292 + 231 WP_198560147.1 aminopeptidase -
- 4453511..4453593 + 83 - - Antitoxin
- 4453513..4453593 - 81 - - Toxin
A4U42_RS19140 4453763..4454101 - 339 WP_022633458.1 YebY family protein -
A4U42_RS19145 4454620..4455063 + 444 WP_022633459.1 hypothetical protein -
A4U42_RS19150 4455415..4455663 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
A4U42_RS19155 4455780..4457522 - 1743 WP_022633461.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4447257..4455663 8406


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T62459 NZ_CP015137:c4453593-4453513 [Dickeya solani IPO 2222]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT62459 NZ_CP015137:4453511-4453593 [Dickeya solani IPO 2222]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References