Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1309454..1309599 | Replicon | chromosome |
| Accession | NZ_CP015130 | ||
| Organism | Klebsiella pneumoniae strain Kpn555 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1309461..1309563 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1309454..1309599 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM92_RS06690 | 1304986..1306419 | + | 1434 | WP_064839198.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WM92_RS06695 | 1306535..1306774 | + | 240 | WP_002911393.1 | YebV family protein | - |
| WM92_RS06700 | 1306872..1307063 | + | 192 | WP_002911395.1 | YebW family protein | - |
| WM92_RS06705 | 1307060..1307713 | - | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| WM92_RS06710 | 1307870..1308838 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| WM92_RS30775 | 1308943..1309086 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1309454..1309599 | + | 146 | - | - | Antitoxin |
| - | 1309461..1309563 | - | 103 | - | - | Toxin |
| WM92_RS06720 | 1309722..1310060 | - | 339 | WP_002911404.1 | YebY family protein | - |
| WM92_RS06725 | 1310077..1310946 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| WM92_RS06730 | 1310950..1311324 | - | 375 | WP_064145947.1 | CopC domain-containing protein YobA | - |
| WM92_RS06735 | 1311437..1311667 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| WM92_RS06740 | 1311746..1312405 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| WM92_RS06745 | 1312409..1314469 | - | 2061 | WP_064839200.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62407 NZ_CP015130:c1309563-1309461 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT62407 NZ_CP015130:1309454-1309599 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
