62403

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5186660..5187285 Replicon chromosome
Accession NZ_CP015120
Organism Klebsiella pneumoniae strain kp757

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag A4U70_RS25750 Protein ID WP_002882817.1
Coordinates 5186660..5187043 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag A4U70_RS25755 Protein ID WP_004150355.1
Coordinates 5187043..5187285 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A4U70_RS25735 5184026..5184928 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
A4U70_RS25740 5184925..5185560 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
A4U70_RS25745 5185557..5186486 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
A4U70_RS25750 5186660..5187043 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
A4U70_RS25755 5187043..5187285 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
A4U70_RS25760 5187490..5188407 + 918 WP_004213381.1 alpha/beta hydrolase -
A4U70_RS25765 5188422..5189363 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
A4U70_RS25770 5189408..5189845 - 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
A4U70_RS25775 5189842..5190702 - 861 WP_004146232.1 virulence factor BrkB family protein -
A4U70_RS25780 5190696..5191295 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T62403 WP_002882817.1 NZ_CP015120:c5187043-5186660 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T62403 NZ_CP015120:c5187043-5186660 [Klebsiella pneumoniae]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACTTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT62403 WP_004150355.1 NZ_CP015120:c5187285-5187043 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT62403 NZ_CP015120:c5187285-5187043 [Klebsiella pneumoniae]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References