Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3007752..3007919 | Replicon | chromosome |
| Accession | NZ_CP015113 | ||
| Organism | Kosakonia radicincitans strain GXGL-4A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3007757..3007859 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3007752..3007919 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3780_RS14005 | 3003837..3005015 | - | 1179 | WP_071920968.1 | two-component sensor histidine kinase | - |
| A3780_RS14010 | 3005012..3005707 | - | 696 | WP_071920969.1 | response regulator | - |
| A3780_RS14015 | 3005835..3006623 | + | 789 | WP_071921860.1 | MipA/OmpV family protein | - |
| A3780_RS14020 | 3006731..3007261 | - | 531 | WP_071920970.1 | outer membrane lipoprotein Blc | - |
| - | 3007752..3007919 | + | 168 | - | - | Antitoxin |
| - | 3007757..3007859 | - | 103 | - | - | Toxin |
| A3780_RS14025 | 3008016..3008354 | - | 339 | WP_035887479.1 | YebY family protein | - |
| A3780_RS14030 | 3008373..3009242 | - | 870 | WP_007371605.1 | copper homeostasis membrane protein CopD | - |
| A3780_RS14035 | 3009246..3009620 | - | 375 | WP_007371604.1 | CopC domain-containing protein YobA | - |
| A3780_RS14040 | 3009758..3009988 | + | 231 | WP_007371603.1 | DNA polymerase III subunit theta | - |
| A3780_RS14045 | 3010000..3010662 | + | 663 | WP_071920971.1 | exodeoxyribonuclease X | - |
| A3780_RS14050 | 3010659..3012719 | - | 2061 | WP_035887482.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62361 NZ_CP015113:c3007859-3007757 [Kosakonia radicincitans]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT62361 NZ_CP015113:3007752-3007919 [Kosakonia radicincitans]
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
