Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 499009..499277 | Replicon | chromosome |
| Accession | NZ_CP015085 | ||
| Organism | Escherichia coli O25b:H4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 499047..499149 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 499009..499277 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WLH_RS02640 | 496167..497606 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WLH_RS02645 | 497723..497959 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| WLH_RS02650 | 498064..498255 | + | 192 | WP_001296140.1 | YebW family protein | - |
| WLH_RS02655 | 498256..498912 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 499009..499277 | + | 269 | - | - | Antitoxin |
| - | 499047..499149 | - | 103 | - | - | Toxin |
| WLH_RS02660 | 499307..499648 | - | 342 | WP_000976472.1 | YebY family protein | - |
| WLH_RS02665 | 499661..500533 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| WLH_RS02670 | 500537..500911 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| WLH_RS02675 | 501050..501280 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| WLH_RS02680 | 501382..502038 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| WLH_RS02685 | 502062..502724 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62287 NZ_CP015085:c499149-499047 [Escherichia coli O25b:H4]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT62287 NZ_CP015085:499009-499277 [Escherichia coli O25b:H4]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
