Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1432947..1433215 Replicon chromosome
Accession NZ_CP015076
Organism Escherichia coli strain Ecol_448

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1432985..1433087 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1432947..1433215 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A4R37_RS07495 1430105..1431544 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
A4R37_RS07500 1431661..1431897 + 237 WP_001295499.1 DUF1480 family protein -
A4R37_RS07505 1432002..1432193 + 192 WP_001296140.1 YebW family protein -
A4R37_RS07510 1432194..1432850 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 1432947..1433215 + 269 - - Antitoxin
- 1432985..1433087 - 103 - - Toxin
A4R37_RS07520 1433245..1433586 - 342 WP_000976472.1 YebY family protein -
A4R37_RS07525 1433599..1434471 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
A4R37_RS07530 1434475..1434849 - 375 WP_000168747.1 CopC domain-containing protein YobA -
A4R37_RS07535 1434988..1435218 + 231 WP_000916763.1 DNA polymerase III subunit theta -
A4R37_RS07540 1435320..1435976 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
A4R37_RS07545 1436000..1436662 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T62240 NZ_CP015076:c1433087-1432985 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT62240 NZ_CP015076:1432947-1433215 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References