Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2807385..2807653 | Replicon | chromosome |
| Accession | NZ_CP015074 | ||
| Organism | Escherichia coli strain Ecol_745 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2807513..2807615 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2807385..2807653 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4R38_RS13615 | 2803938..2804600 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| A4R38_RS13620 | 2804624..2805280 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| A4R38_RS13625 | 2805382..2805612 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A4R38_RS13630 | 2805751..2806125 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| A4R38_RS13635 | 2806129..2807001 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| A4R38_RS13640 | 2807014..2807355 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2807385..2807653 | - | 269 | - | - | Antitoxin |
| - | 2807513..2807615 | + | 103 | - | - | Toxin |
| A4R38_RS13650 | 2807750..2808406 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| A4R38_RS13655 | 2808407..2808598 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A4R38_RS13660 | 2808703..2808939 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A4R38_RS13665 | 2809056..2810495 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62218 NZ_CP015074:2807513-2807615 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT62218 NZ_CP015074:c2807653-2807385 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
