Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3339366..3339511 | Replicon | chromosome |
| Accession | NZ_CP015025 | ||
| Organism | Klebsiella pneumoniae strain Kpn223 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3339373..3339475 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3339366..3339511 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM91_RS16630 | 3334899..3336332 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WM91_RS16635 | 3336448..3336687 | + | 240 | WP_002911393.1 | YebV family protein | - |
| WM91_RS16640 | 3336785..3336976 | + | 192 | WP_002911395.1 | YebW family protein | - |
| WM91_RS16645 | 3336973..3337626 | - | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| WM91_RS16650 | 3337783..3338751 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| WM91_RS29460 | 3338856..3338999 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3339366..3339511 | + | 146 | - | - | Antitoxin |
| - | 3339373..3339475 | - | 103 | - | - | Toxin |
| WM91_RS16660 | 3339634..3339972 | - | 339 | WP_004189269.1 | YebY family protein | - |
| WM91_RS16665 | 3339989..3340858 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| WM91_RS16670 | 3340862..3341236 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| WM91_RS16675 | 3341349..3341579 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| WM91_RS16680 | 3341658..3342317 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| WM91_RS16685 | 3342321..3344381 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T62115 NZ_CP015025:c3339475-3339373 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT62115 NZ_CP015025:3339366-3339511 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
