Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 579519..579790 | Replicon | chromosome |
| Accession | NZ_CP015023 | ||
| Organism | Escherichia coli strain SRCC 1675 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 579557..579660 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 579519..579790 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AR439_RS03560 | 576676..578115 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AR439_RS03565 | 578233..578469 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AR439_RS03570 | 578574..578765 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AR439_RS03575 | 578766..579422 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 579519..579790 | + | 272 | - | - | Antitoxin |
| - | 579557..579660 | - | 104 | - | - | Toxin |
| AR439_RS03585 | 579818..580159 | - | 342 | WP_000976483.1 | YebY family protein | - |
| AR439_RS03590 | 580172..581044 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| AR439_RS03595 | 581048..581422 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| AR439_RS03600 | 581561..581791 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AR439_RS03605 | 581893..582549 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| AR439_RS03610 | 582573..583235 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62078 NZ_CP015023:c579660-579557 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT62078 NZ_CP015023:579519-579790 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
