Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 49106..49377 | Replicon | chromosome |
| Accession | NZ_CP015020 | ||
| Organism | Escherichia coli strain 28RC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 49236..49339 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 49106..49377 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ARC77_RS00240 | 45661..46323 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| ARC77_RS00245 | 46347..47003 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| ARC77_RS00250 | 47105..47335 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ARC77_RS00255 | 47474..47848 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| ARC77_RS00260 | 47852..48724 | + | 873 | WP_062946120.1 | copper homeostasis membrane protein CopD | - |
| ARC77_RS00265 | 48737..49078 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 49106..49377 | - | 272 | - | - | Antitoxin |
| - | 49236..49339 | + | 104 | - | - | Toxin |
| ARC77_RS00275 | 49474..50130 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| ARC77_RS00280 | 50131..50322 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ARC77_RS00285 | 50427..50663 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ARC77_RS00290 | 50781..52220 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC | 589..65218 | 64629 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T62030 NZ_CP015020:49236-49339 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT62030 NZ_CP015020:c49377-49106 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
