Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/ParE-CC2985 |
Location | 3826048..3826576 | Replicon | chromosome |
Accession | NZ_CP014947 | ||
Organism | Pseudomonas koreensis strain D26 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A554AHL9 |
Locus tag | AYO71_RS17115 | Protein ID | WP_041480302.1 |
Coordinates | 3826286..3826576 (+) | Length | 97 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A341F4V9 |
Locus tag | AYO71_RS28915 | Protein ID | WP_016770738.1 |
Coordinates | 3826048..3826293 (+) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AYO71_RS17100 | 3821792..3823495 | + | 1704 | WP_041480304.1 | amidase | - |
AYO71_RS17105 | 3823696..3824991 | + | 1296 | WP_041480303.1 | OprD family porin | - |
AYO71_RS17110 | 3825371..3825706 | + | 336 | WP_041480422.1 | hypothetical protein | - |
AYO71_RS28915 | 3826048..3826293 | + | 246 | WP_016770738.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
AYO71_RS17115 | 3826286..3826576 | + | 291 | WP_041480302.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
AYO71_RS17120 | 3826922..3829216 | + | 2295 | WP_052392206.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11136.67 Da Isoelectric Point: 5.6837
>T61908 WP_041480302.1 NZ_CP014947:3826286-3826576 [Pseudomonas koreensis]
MAEYRLTPAAEADLEAIWTYTAQQWGLDQANRYIDILTESFEQLADRPKTAPACDAIRPGYRRCSVESHMIYFRITAYGI
AIIRILHDRMEAQRNL
MAEYRLTPAAEADLEAIWTYTAQQWGLDQANRYIDILTESFEQLADRPKTAPACDAIRPGYRRCSVESHMIYFRITAYGI
AIIRILHDRMEAQRNL
Download Length: 291 bp
>T61908 NZ_CP014947:3826286-3826576 [Pseudomonas koreensis]
ATGGCTGAATACCGACTTACCCCCGCCGCCGAAGCGGATCTTGAGGCTATCTGGACCTATACAGCTCAACAATGGGGTTT
GGATCAGGCCAATCGCTACATCGACATCCTGACTGAGTCCTTCGAGCAGTTGGCTGATCGTCCCAAAACAGCACCCGCAT
GCGACGCTATCCGCCCCGGTTACCGACGCTGCAGCGTGGAGAGTCACATGATTTATTTTCGAATCACCGCCTATGGGATC
GCGATCATCAGAATCTTGCATGACCGGATGGAAGCGCAGCGTAATCTCTGA
ATGGCTGAATACCGACTTACCCCCGCCGCCGAAGCGGATCTTGAGGCTATCTGGACCTATACAGCTCAACAATGGGGTTT
GGATCAGGCCAATCGCTACATCGACATCCTGACTGAGTCCTTCGAGCAGTTGGCTGATCGTCCCAAAACAGCACCCGCAT
GCGACGCTATCCGCCCCGGTTACCGACGCTGCAGCGTGGAGAGTCACATGATTTATTTTCGAATCACCGCCTATGGGATC
GCGATCATCAGAATCTTGCATGACCGGATGGAAGCGCAGCGTAATCTCTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 9354.43 Da Isoelectric Point: 7.3193
>AT61908 WP_016770738.1 NZ_CP014947:3826048-3826293 [Pseudomonas koreensis]
MATVRKTITVTDQQDHWIKAQIEAGHYTNDSEYIRDLIRREQERNAELETVRAALREGESSGAPRPFDADAFKKRMLRAH
G
MATVRKTITVTDQQDHWIKAQIEAGHYTNDSEYIRDLIRREQERNAELETVRAALREGESSGAPRPFDADAFKKRMLRAH
G
Download Length: 246 bp
>AT61908 NZ_CP014947:3826048-3826293 [Pseudomonas koreensis]
ATGGCTACCGTACGCAAAACCATAACCGTGACTGACCAGCAAGACCATTGGATCAAAGCTCAAATAGAAGCGGGACATTA
CACCAACGACAGCGAATATATCCGCGATTTGATCCGTCGAGAGCAAGAGCGAAACGCTGAACTGGAAACCGTCCGCGCAG
CCCTTCGAGAAGGAGAATCCAGTGGTGCCCCCCGGCCTTTCGATGCTGATGCTTTCAAAAAGAGAATGTTGAGGGCGCAT
GGCTGA
ATGGCTACCGTACGCAAAACCATAACCGTGACTGACCAGCAAGACCATTGGATCAAAGCTCAAATAGAAGCGGGACATTA
CACCAACGACAGCGAATATATCCGCGATTTGATCCGTCGAGAGCAAGAGCGAAACGCTGAACTGGAAACCGTCCGCGCAG
CCCTTCGAGAAGGAGAATCCAGTGGTGCCCCCCGGCCTTTCGATGCTGATGCTTTCAAAAAGAGAATGTTGAGGGCGCAT
GGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A554AHL9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A341F4V9 |