61800

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ygfYX/Cpta(toxin)
Location 2790636..2791323 Replicon chromosome
Accession NZ_CP014782
Organism Shewanella psychrophila strain WP2

Toxin (Protein)


Gene name ygfX Uniprot ID -
Locus tag sps_RS12005 Protein ID WP_077752750.1
Coordinates 2790636..2791103 (-) Length 156 a.a.

Antitoxin (Protein)


Gene name ygfY Uniprot ID -
Locus tag sps_RS12010 Protein ID WP_077755657.1
Coordinates 2791084..2791323 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
sps_RS11980 2786140..2786595 - 456 WP_077752745.1 SoxR reducing system RseC family protein -
sps_RS11985 2786621..2787553 - 933 WP_077752746.1 MucB/RseB C-terminal domain-containing protein -
sps_RS11990 2787585..2788196 - 612 WP_077752747.1 anti-sigma factor -
sps_RS11995 2788248..2788826 - 579 WP_077752748.1 RNA polymerase sigma factor RpoE -
sps_RS12000 2789026..2790639 + 1614 WP_077752749.1 L-aspartate oxidase -
sps_RS12005 2790636..2791103 - 468 WP_077752750.1 hypothetical protein Toxin
sps_RS12010 2791084..2791323 - 240 WP_077755657.1 succinate dehydrogenase assembly factor 2 Antitoxin
sps_RS12015 2791486..2792397 - 912 WP_077752751.1 transcriptional activator NhaR -
sps_RS12020 2792443..2792826 - 384 WP_077752752.1 hypothetical protein -
sps_RS12025 2792866..2794047 - 1182 WP_077752753.1 Na+/H+ antiporter NhaA -
sps_RS12030 2794372..2795223 - 852 WP_077752754.1 thymidylate synthase -
sps_RS12035 2795335..2796138 - 804 WP_077752755.1 sulfite exporter TauE/SafE family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(5-151)

Antitoxin

Flavinator of succinate dehydrogenase

(5-74)


Sequences

Toxin        


Download         Length: 156 a.a.        Molecular weight: 18027.97 Da        Isoelectric Point: 8.0272

>T61800 WP_077752750.1 NZ_CP014782:c2791103-2790636 [Shewanella psychrophila]
VADRRHSFRLTPSFDQRLALVVLASVCLSSFLVWPPLDNLIYLSIKYCAACLTLTFFSYQFWQLKHWYCRFSLGRDGEGR
IVFGDKSQLTSVDETAMEKFTLVLNPIVTPLVVFFYINTQDMSVGRRRLVIIWADMLDDTSYRHLCRLLLSNSQD

Download         Length: 468 bp

>T61800 NZ_CP014782:c2791103-2790636 [Shewanella psychrophila]
GTGGCAGACCGGCGCCATAGTTTTAGACTAACTCCTTCCTTCGACCAGCGTCTCGCGTTGGTCGTTTTAGCGAGTGTTTG
CTTAAGCTCATTTCTCGTCTGGCCTCCTCTAGATAATCTTATCTACCTGAGTATTAAATATTGCGCTGCGTGTTTGACTC
TGACGTTTTTCTCTTATCAGTTTTGGCAATTAAAACATTGGTATTGTCGATTCAGCTTGGGTCGTGATGGGGAAGGTAGG
ATAGTTTTTGGAGACAAGAGTCAGCTTACTTCTGTGGATGAAACTGCCATGGAAAAATTCACCTTGGTCTTGAATCCAAT
CGTTACACCATTAGTGGTTTTTTTCTATATCAACACCCAAGATATGAGTGTTGGTCGCAGACGGTTAGTGATCATTTGGG
CTGATATGTTAGACGACACAAGTTATCGTCACCTGTGTCGTCTGCTTCTTTCTAATTCGCAGGATTAG

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9243.82 Da        Isoelectric Point: 5.6857

>AT61800 WP_077755657.1 NZ_CP014782:c2791323-2791084 [Shewanella psychrophila]
MKISRVRWACRRGMLELDVLFQPFVESHYEQLSVKNKGIFVRLLEGEDPELFAWFMGHEQCPDPELAEMVILVRGRPAP

Download         Length: 240 bp

>AT61800 NZ_CP014782:c2791323-2791084 [Shewanella psychrophila]
ATGAAAATATCGAGAGTGAGATGGGCATGCCGACGGGGTATGCTTGAGTTGGACGTTCTTTTTCAACCTTTTGTCGAGAG
TCACTACGAGCAGTTATCAGTTAAGAACAAAGGGATTTTTGTCAGACTTCTCGAAGGGGAAGATCCTGAGTTATTTGCTT
GGTTTATGGGTCATGAACAGTGTCCCGACCCTGAATTGGCCGAGATGGTCATACTTGTCCGTGGCAGACCGGCGCCATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References