Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | prpT-prpA/CC2985(antitoxin) |
Location | 2368516..2369056 | Replicon | chromosome |
Accession | NZ_CP014760 | ||
Organism | Legionella pneumophila strain F4469 |
Toxin (Protein)
Gene name | PrpT | Uniprot ID | - |
Locus tag | A1D14_RS10905 | Protein ID | WP_014844324.1 |
Coordinates | 2368760..2369056 (+) | Length | 99 a.a. |
Antitoxin (Protein)
Gene name | PrpA | Uniprot ID | - |
Locus tag | A1D14_RS10900 | Protein ID | WP_027224835.1 |
Coordinates | 2368516..2368770 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
A1D14_RS10880 | 2364420..2365595 | - | 1176 | WP_027224832.1 | ISL3 family transposase | - |
A1D14_RS10885 | 2365634..2366764 | - | 1131 | WP_064319116.1 | ISL3 family transposase | - |
A1D14_RS10890 | 2366919..2367497 | + | 579 | WP_027224833.1 | hypothetical protein | - |
A1D14_RS10895 | 2367602..2368168 | + | 567 | WP_027224834.1 | hypothetical protein | - |
A1D14_RS10900 | 2368516..2368770 | + | 255 | WP_027224835.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
A1D14_RS10905 | 2368760..2369056 | + | 297 | WP_014844324.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
A1D14_RS10915 | 2369517..2370531 | - | 1015 | Protein_2088 | transposase | - |
A1D14_RS10920 | 2370794..2371003 | + | 210 | WP_010947832.1 | cold-shock protein | - |
A1D14_RS10925 | 2371243..2372649 | + | 1407 | WP_014844326.1 | ATP-dependent RNA helicase DbpA | - |
A1D14_RS10930 | 2372806..2373717 | + | 912 | WP_014844327.1 | cation diffusion facilitator family transporter | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | - | 2300058..2369302 | 69244 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11582.28 Da Isoelectric Point: 7.2728
>T61766 WP_014844324.1 NZ_CP014760:2368760-2369056 [Legionella pneumophila]
MSNKTYRLYPKAVEDLESIYLYSTNEFGIKRTEDYILAIDLSFQRLADDPLIARKCDYIRPELRAFNVGSHIIFFKTTDY
GISVIRVLHQSMDFNRHL
MSNKTYRLYPKAVEDLESIYLYSTNEFGIKRTEDYILAIDLSFQRLADDPLIARKCDYIRPELRAFNVGSHIIFFKTTDY
GISVIRVLHQSMDFNRHL
Download Length: 297 bp
>T61766 NZ_CP014760:2368760-2369056 [Legionella pneumophila]
ATGTCAAATAAAACATATCGTCTTTACCCAAAAGCGGTAGAAGATCTTGAGTCCATCTATTTATATAGCACAAATGAGTT
TGGTATCAAACGAACAGAGGATTATATTTTAGCTATAGATTTAAGTTTTCAGCGCCTTGCAGATGATCCCTTAATTGCTC
GAAAATGTGATTATATTCGTCCAGAATTACGCGCATTTAATGTTGGCTCTCACATTATTTTTTTCAAAACTACCGATTAC
GGCATTTCTGTTATTCGAGTGTTGCATCAATCTATGGATTTTAATAGACATCTATAA
ATGTCAAATAAAACATATCGTCTTTACCCAAAAGCGGTAGAAGATCTTGAGTCCATCTATTTATATAGCACAAATGAGTT
TGGTATCAAACGAACAGAGGATTATATTTTAGCTATAGATTTAAGTTTTCAGCGCCTTGCAGATGATCCCTTAATTGCTC
GAAAATGTGATTATATTCGTCCAGAATTACGCGCATTTAATGTTGGCTCTCACATTATTTTTTTCAAAACTACCGATTAC
GGCATTTCTGTTATTCGAGTGTTGCATCAATCTATGGATTTTAATAGACATCTATAA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9786.14 Da Isoelectric Point: 9.9613
>AT61766 WP_027224835.1 NZ_CP014760:2368516-2368770 [Legionella pneumophila]
MTRTMTVDLGNELRNYVESLVRSGDYRSNSEVLRESLRLLREKQAESKLEQLRHLIDEGAASGKPETWDAHDFLKKMKKK
SHVK
MTRTMTVDLGNELRNYVESLVRSGDYRSNSEVLRESLRLLREKQAESKLEQLRHLIDEGAASGKPETWDAHDFLKKMKKK
SHVK
Download Length: 255 bp
>AT61766 NZ_CP014760:2368516-2368770 [Legionella pneumophila]
ATGACCCGTACAATGACTGTTGATTTGGGTAATGAACTTCGTAATTACGTGGAATCACTTGTACGCTCAGGGGATTATAG
AAGTAATAGCGAAGTATTAAGAGAGTCGTTGCGTTTACTTCGTGAAAAACAAGCTGAATCAAAACTAGAGCAGTTGCGTC
ACCTTATAGATGAAGGGGCAGCTAGCGGGAAGCCTGAAACATGGGATGCACATGATTTTCTTAAGAAAATGAAGAAAAAA
TCCCATGTCAAATAA
ATGACCCGTACAATGACTGTTGATTTGGGTAATGAACTTCGTAATTACGTGGAATCACTTGTACGCTCAGGGGATTATAG
AAGTAATAGCGAAGTATTAAGAGAGTCGTTGCGTTTACTTCGTGAAAAACAAGCTGAATCAAAACTAGAGCAGTTGCGTC
ACCTTATAGATGAAGGGGCAGCTAGCGGGAAGCCTGAAACATGGGATGCACATGATTTTCTTAAGAAAATGAAGAAAAAA
TCCCATGTCAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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