Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3311770..3311915 | Replicon | chromosome |
| Accession | NZ_CP014755 | ||
| Organism | Klebsiella pneumoniae strain AATZP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3311777..3311879 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3311770..3311915 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM86_RS16330 | 3307301..3308734 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WM86_RS16335 | 3308850..3309089 | + | 240 | WP_002911393.1 | YebV family protein | - |
| WM86_RS16340 | 3309187..3309378 | + | 192 | WP_002911395.1 | YebW family protein | - |
| WM86_RS16345 | 3309375..3310028 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| WM86_RS16350 | 3310185..3311153 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| WM86_RS29240 | 3311258..3311401 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 3311770..3311915 | + | 146 | - | - | Antitoxin |
| - | 3311777..3311879 | - | 103 | - | - | Toxin |
| WM86_RS16360 | 3312038..3312376 | - | 339 | WP_002911404.1 | YebY family protein | - |
| WM86_RS16365 | 3312393..3313262 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| WM86_RS16370 | 3313266..3313640 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| WM86_RS16375 | 3313753..3313983 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| WM86_RS16380 | 3314062..3314721 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| WM86_RS16385 | 3314725..3316785 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T61749 NZ_CP014755:c3311879-3311777 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT61749 NZ_CP014755:3311770-3311915 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
