Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 41681..41827 | Replicon | chromosome |
| Accession | NZ_CP014748 | ||
| Organism | Klebsiella aerogenes strain FDAARGOS_139 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 41689..41792 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 41681..41827 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL497_RS00625 | 36983..37501 | + | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
| AL497_RS00630 | 37519..38268 | + | 750 | WP_015366013.1 | molecular chaperone | - |
| AL497_RS00635 | 38271..40595 | + | 2325 | WP_032705949.1 | fimbrial biogenesis outer membrane usher protein | - |
| AL497_RS00640 | 40614..41561 | + | 948 | WP_032706245.1 | spore coat U domain-containing protein | - |
| - | 41681..41827 | + | 147 | - | - | Antitoxin |
| - | 41689..41792 | - | 104 | - | - | Toxin |
| AL497_RS00645 | 41949..42290 | - | 342 | WP_015366010.1 | YebY family protein | - |
| AL497_RS00650 | 42304..43173 | - | 870 | WP_032705951.1 | copper homeostasis membrane protein CopD | - |
| AL497_RS00655 | 43177..43551 | - | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| AL497_RS00660 | 43686..43916 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| AL497_RS00665 | 43996..44655 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| AL497_RS00670 | 44658..46718 | - | 2061 | WP_032705952.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T61720 NZ_CP014748:c41792-41689 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT61720 NZ_CP014748:41681-41827 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
