Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1884780..1885048 | Replicon | chromosome |
| Accession | NZ_CP014667 | ||
| Organism | Escherichia coli strain ECONIH2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1884818..1884920 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1884780..1885048 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WM48_RS09420 | 1881937..1883376 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WM48_RS09425 | 1883494..1883730 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| WM48_RS09430 | 1883835..1884026 | + | 192 | WP_001296140.1 | YebW family protein | - |
| WM48_RS09435 | 1884027..1884683 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 1884780..1885048 | + | 269 | - | - | Antitoxin |
| - | 1884818..1884920 | - | 103 | - | - | Toxin |
| WM48_RS09445 | 1885078..1885419 | - | 342 | WP_000984819.1 | YebY family protein | - |
| WM48_RS09450 | 1885432..1886304 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| WM48_RS09455 | 1886308..1886682 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| WM48_RS09460 | 1886821..1887051 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| WM48_RS09465 | 1887154..1887810 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| WM48_RS09470 | 1887834..1888496 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T61653 NZ_CP014667:c1884920-1884818 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT61653 NZ_CP014667:1884780-1885048 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
