Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3378600..3378745 | Replicon | chromosome |
| Accession | NZ_CP014647 | ||
| Organism | Klebsiella pneumoniae strain KPNIH36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3378607..3378709 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3378600..3378745 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABA76_RS17125 | 3374132..3375565 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ABA76_RS17130 | 3375681..3375920 | + | 240 | WP_002911393.1 | YebV family protein | - |
| ABA76_RS17135 | 3376018..3376209 | + | 192 | WP_002911395.1 | YebW family protein | - |
| ABA76_RS17140 | 3376206..3376859 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| ABA76_RS17145 | 3377016..3377984 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| ABA76_RS31015 | 3378089..3378232 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3378600..3378745 | + | 146 | - | - | Antitoxin |
| - | 3378607..3378709 | - | 103 | - | - | Toxin |
| ABA76_RS17155 | 3378868..3379206 | - | 339 | WP_002911404.1 | YebY family protein | - |
| ABA76_RS17160 | 3379223..3380092 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| ABA76_RS17165 | 3380096..3380470 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ABA76_RS17170 | 3380583..3380813 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ABA76_RS17175 | 3380892..3381551 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ABA76_RS17180 | 3381555..3383615 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T61628 NZ_CP014647:c3378709-3378607 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT61628 NZ_CP014647:3378600-3378745 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
