Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1354117..1354388 | Replicon | chromosome |
| Accession | NZ_CP014642 | ||
| Organism | Escherichia coli strain BLK16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1354155..1354258 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1354117..1354388 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYR48_RS06995 | 1351274..1352713 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AYR48_RS07000 | 1352831..1353067 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AYR48_RS07005 | 1353172..1353363 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AYR48_RS07010 | 1353364..1354020 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1354117..1354388 | + | 272 | - | - | Antitoxin |
| - | 1354155..1354258 | - | 104 | - | - | Toxin |
| AYR48_RS07015 | 1354415..1354756 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AYR48_RS07020 | 1354769..1355641 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| AYR48_RS07025 | 1355645..1356019 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AYR48_RS07030 | 1356158..1356388 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AYR48_RS07035 | 1356490..1357146 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AYR48_RS07040 | 1357170..1357832 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T61603 NZ_CP014642:c1354258-1354155 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT61603 NZ_CP014642:1354117-1354388 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
