Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1354060..1354331 | Replicon | chromosome |
| Accession | NZ_CP014641 | ||
| Organism | Escherichia coli strain BLK9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1354098..1354201 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1354060..1354331 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYL54_RS06990 | 1351217..1352656 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AYL54_RS06995 | 1352774..1353010 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AYL54_RS07000 | 1353115..1353306 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AYL54_RS07005 | 1353307..1353963 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1354060..1354331 | + | 272 | - | - | Antitoxin |
| - | 1354098..1354201 | - | 104 | - | - | Toxin |
| AYL54_RS07010 | 1354358..1354699 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AYL54_RS07015 | 1354712..1355584 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| AYL54_RS07020 | 1355588..1355962 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AYL54_RS07025 | 1356101..1356331 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AYL54_RS07030 | 1356433..1357089 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AYL54_RS07035 | 1357113..1357775 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T61583 NZ_CP014641:c1354201-1354098 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT61583 NZ_CP014641:1354060-1354331 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
