Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 615520..615791 | Replicon | chromosome |
| Accession | NZ_CP014583 | ||
| Organism | Escherichia coli strain CFSAN004176 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 615558..615661 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 615520..615791 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV59_RS04290 | 612677..614116 | + | 1440 | WP_024226338.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BCV59_RS04295 | 614234..614470 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BCV59_RS04300 | 614575..614766 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BCV59_RS04305 | 614767..615423 | - | 657 | WP_069357077.1 | protein-serine/threonine phosphatase | - |
| - | 615520..615791 | + | 272 | - | - | Antitoxin |
| - | 615558..615661 | - | 104 | - | - | Toxin |
| BCV59_RS04315 | 615819..616160 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BCV59_RS04320 | 616173..617045 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| BCV59_RS04325 | 617049..617423 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BCV59_RS04330 | 617562..617792 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BCV59_RS04335 | 617894..618550 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| BCV59_RS04340 | 618574..619236 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T61520 NZ_CP014583:c615661-615558 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT61520 NZ_CP014583:615520-615791 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
