Detailed information of TA system TA061319

Bioinformatically predicted

Overview

TA module

• Type: IV
• Classification (family/domain): ykfI-yeeU/CbtA-CbeA
• Location: 4930152..4930853
• Replicon: chromosome
• Accession: NZ_CP014495
• Organism: Escherichia coli strain SaT040

Toxin (Protein)

• Gene name: ykfI
• Uniprot ID: A0A515RBV3
• Locus tag: AVR72_RS24665
• Protein ID: WP_001531265.1
• Coordinates: 4930518..4930853 (+)
• Length: 112 a.a.

Antitoxin (Protein)

• Gene name: yeeU
• Uniprot ID: -
• Locus tag: AVR72_RS24660
• Protein ID: WP_032143152.1
• Coordinates: 4930152..4930487 (+)
• Length: 112 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AVR72_RS24635	4926099..4926317	-	219	WP_001531256.1	AlpA family phage regulatory protein	-
AVR72_RS24640	4926435..4927049	-	615	WP_001531257.1	inovirus Gp2 family protein	-
AVR72_RS24645	4927642..4928595	+	954	WP_001531259.1	hypothetical protein	-
AVR72_RS24650	4928831..4929649	+	819	WP_001531260.1	DUF945 domain-containing protein	-
AVR72_RS24655	4929679..4930152	+	474	WP_001531261.1	DNA repair protein RadC	-
AVR72_RS24660	4930152..4930487	+	336	WP_032143152.1	type IV toxin-antitoxin system YeeU family antitoxin	Antitoxin
AVR72_RS24665	4930518..4930853	+	336	WP_001531265.1	TA system toxin CbtA family protein	Toxin
AVR72_RS24670	4930984..4931817	+	834	WP_001531266.1	DUF4942 domain-containing protein	-
AVR72_RS24675	4931894..4932142	+	249	WP_024187601.1	ribbon-helix-helix domain-containing protein	-
AVR72_RS24680	4932146..4932421	+	276	WP_001531268.1	type II toxin-antitoxin system RelE/ParE family toxin	-
AVR72_RS24685	4932535..4933332	+	798	WP_001531269.1	helix-turn-helix transcriptional regulator	-
AVR72_RS28355	4933743..4933914	+	172	Protein_4699	integrase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• CbtA toxin of type IV toxin-antitoxin system (1-109)

Antitoxin

• Antitoxin CbeA (11-110)

Sequences

Toxin

Protein

• Length: 112 a.a.
• Molecular weight: 12867.89 Da
• Isoelectric Point: 9.8953

>T61319 WP_001531265.1 NZ_CP014495:4930518-4930853 [Escherichia coli]
MKIIPATTLRATTSYLSPVVVWQILLARLLEQHYGLNLNDTPFNNEKVIQEHIDAGITLVDAVNFLVEKYELIRIDRKGF
SWQEQTPYLRAVDILRARQATGLLRRRHNTP

Nucleotide

• Length: 336 bp

>T61319 NZ_CP014495:4930518-4930853 [Escherichia coli]
ATGAAAATTATTCCTGCAACGACGCTGCGGGCGACTACGTCATATCTGTCGCCCGTCGTGGTCTGGCAAATATTACTGGC
CCGCCTGCTGGAGCAGCACTACGGGCTGAATCTTAATGACACACCATTCAACAATGAAAAGGTGATTCAGGAACACATAG
ACGCCGGGATCACTCTGGTCGATGCCGTCAATTTTCTGGTGGAGAAGTACGAATTGATCCGTATCGACAGGAAAGGATTT
AGCTGGCAGGAACAGACGCCTTATCTTCGTGCGGTCGATATTTTACGGGCGCGGCAGGCTACAGGTCTGCTGCGCCGCCG
CCATAACACGCCATAA

Antitoxin

Protein

• Length: 112 a.a.
• Molecular weight: 12505.48 Da
• Isoelectric Point: 7.1637

>AT61319 WP_032143152.1 NZ_CP014495:4930152-4930487 [Escherichia coli]
MLQKDKVMQQECGLPCTVTPRFTARLVQERHNLHYLADRAAITGKFSSPDLLHIDQAFPVLMKQLELKLADDELSACQQR
TVTLYAKGLTCEADTLGSCGYVYIAIYPTQR

Nucleotide

• Length: 336 bp

>AT61319 NZ_CP014495:4930152-4930487 [Escherichia coli]
ATGCTGCAAAAGGATAAGGTCATGCAACAAGAATGTGGGCTTCCCTGTACCGTAACACCACGCTTCACTGCTCGACTGGT
ACAGGAAAGACATAACCTGCATTACCTGGCTGATCGGGCCGCAATCACCGGGAAATTCAGCTCCCCGGATCTGCTGCATA
TCGACCAGGCTTTTCCGGTGCTGATGAAACAACTGGAGCTGAAACTGGCTGACGATGAACTCTCCGCCTGCCAACAACGT
ACCGTCACACTATACGCCAAAGGACTAACCTGCGAAGCCGATACGCTGGGTTCCTGTGGTTACGTCTATATCGCTATTTA
TCCCACTCAACGCTGA

Structures

Toxin

• AlphaFold DB: A0A515RBV3