Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2640623..2640737 | Replicon | chromosome |
| Accession | NZ_CP014474 | ||
| Organism | Serratia rubidaea strain 1122 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2640640..2640736 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2640623..2640737 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXX16_RS12020 | 2636135..2637094 | + | 960 | WP_061325499.1 | prolyl aminopeptidase | - |
| AXX16_RS12025 | 2637141..2637371 | - | 231 | WP_015672700.1 | DNA polymerase III subunit theta | - |
| AXX16_RS12030 | 2637885..2638406 | + | 522 | WP_015672699.1 | non-heme ferritin | - |
| AXX16_RS12035 | 2638820..2639203 | + | 384 | WP_061323170.1 | CopC domain-containing protein YobA | - |
| AXX16_RS12040 | 2639207..2640088 | + | 882 | WP_061323172.1 | copper homeostasis membrane protein CopD | - |
| AXX16_RS12045 | 2640157..2640498 | + | 342 | WP_061323175.1 | YebY family protein | - |
| - | 2640623..2640737 | - | 115 | - | - | Antitoxin |
| - | 2640640..2640736 | + | 97 | - | - | Toxin |
| AXX16_RS12050 | 2640815..2641894 | - | 1080 | WP_061323178.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| AXX16_RS12055 | 2641872..2642144 | - | 273 | WP_061323181.1 | hypothetical protein | - |
| AXX16_RS12060 | 2642214..2642399 | - | 186 | WP_061323184.1 | hypothetical protein | - |
| AXX16_RS12065 | 2642402..2642902 | - | 501 | WP_061323187.1 | siphovirus Gp157 family protein | - |
| AXX16_RS12070 | 2642899..2645544 | - | 2646 | WP_061323190.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2633125..2727048 | 93923 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T61235 NZ_CP014474:2640640-2640736 [Serratia rubidaea]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 115 bp
>AT61235 NZ_CP014474:c2640737-2640623 [Serratia rubidaea]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
