Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1536369..1536640 | Replicon | chromosome |
| Accession | NZ_CP014314 | ||
| Organism | Escherichia coli O157:H7 strain JEONG-1266 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1536499..1536602 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1536369..1536640 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JEONG1266_RS08135 | 1532924..1533586 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| JEONG1266_RS08140 | 1533610..1534266 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| JEONG1266_RS08145 | 1534368..1534598 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JEONG1266_RS08150 | 1534737..1535111 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| JEONG1266_RS08155 | 1535115..1535987 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| JEONG1266_RS08160 | 1536000..1536341 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 1536369..1536640 | - | 272 | - | - | Antitoxin |
| - | 1536499..1536602 | + | 104 | - | - | Toxin |
| JEONG1266_RS08170 | 1536737..1537393 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| JEONG1266_RS08175 | 1537394..1537585 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JEONG1266_RS08180 | 1537690..1537926 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JEONG1266_RS08185 | 1538044..1539483 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T60661 NZ_CP014314:1536499-1536602 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT60661 NZ_CP014314:c1536640-1536369 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
