Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2028181..2028452 | Replicon | chromosome |
| Accession | NZ_CP014272 | ||
| Organism | Escherichia coli K-12 strain K-12 C3026 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2028219..2028322 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2028181..2028452 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3026_RS10430 | 2025338..2026777 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C3026_RS10435 | 2026895..2027131 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C3026_RS10440 | 2027236..2027427 | + | 192 | WP_000457842.1 | YebW family protein | - |
| C3026_RS10445 | 2027428..2028084 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2028181..2028452 | + | 272 | - | - | Antitoxin |
| - | 2028219..2028322 | - | 104 | - | - | Toxin |
| C3026_RS10455 | 2028480..2028821 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C3026_RS10460 | 2028834..2029706 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| C3026_RS10465 | 2029710..2030084 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C3026_RS10470 | 2030223..2030453 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C3026_RS10475 | 2030555..2031211 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C3026_RS10480 | 2031235..2031897 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T60580 NZ_CP014272:c2028322-2028219 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT60580 NZ_CP014272:2028181-2028452 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
