Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1829113..1829384 | Replicon | chromosome |
| Accession | NZ_CP014270 | ||
| Organism | Escherichia coli K-12 strain K-12 DHB4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1829151..1829254 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1829113..1829384 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DHB4_RS09205 | 1826270..1827709 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DHB4_RS09210 | 1827827..1828063 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DHB4_RS09215 | 1828168..1828359 | + | 192 | WP_000457842.1 | YebW family protein | - |
| DHB4_RS09220 | 1828360..1829016 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1829113..1829384 | + | 272 | - | - | Antitoxin |
| - | 1829151..1829254 | - | 104 | - | - | Toxin |
| DHB4_RS09230 | 1829412..1829753 | - | 342 | WP_000976476.1 | YebY family protein | - |
| DHB4_RS09235 | 1829766..1830638 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DHB4_RS09240 | 1830642..1831016 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DHB4_RS09245 | 1831155..1831385 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DHB4_RS09250 | 1831487..1832143 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DHB4_RS09255 | 1832167..1832829 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T60528 NZ_CP014270:c1829254-1829151 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT60528 NZ_CP014270:1829113-1829384 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
