60499

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2685230..2685501 Replicon chromosome
Accession NZ_CP014269
Organism Escherichia coli B strain C3029

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2685268..2685371 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2685230..2685501 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C3029_RS13620 2682387..2683826 + 1440 WP_000057022.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
C3029_RS13625 2683944..2684180 + 237 WP_001295499.1 DUF1480 family protein -
C3029_RS13630 2684285..2684476 + 192 WP_001296140.1 YebW family protein -
C3029_RS13635 2684477..2685133 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2685230..2685501 + 272 - - Antitoxin
- 2685268..2685371 - 104 - - Toxin
C3029_RS13645 2685528..2685869 - 342 WP_000976472.1 YebY family protein -
C3029_RS13650 2685882..2686754 - 873 WP_000879293.1 copper homeostasis membrane protein CopD -
C3029_RS13655 2686758..2687132 - 375 WP_000168747.1 CopC domain-containing protein YobA -
C3029_RS13660 2687271..2687501 + 231 WP_000916763.1 DNA polymerase III subunit theta -
C3029_RS13665 2687603..2688259 + 657 WP_000011657.1 carbon-nitrogen hydrolase family protein -
C3029_RS13670 2688283..2688945 + 663 WP_000944245.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T60499 NZ_CP014269:c2685371-2685268 [Escherichia coli B]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT60499 NZ_CP014269:2685230-2685501 [Escherichia coli B]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References