Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2685230..2685501 | Replicon | chromosome |
| Accession | NZ_CP014269 | ||
| Organism | Escherichia coli B strain C3029 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2685268..2685371 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2685230..2685501 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3029_RS13620 | 2682387..2683826 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C3029_RS13625 | 2683944..2684180 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C3029_RS13630 | 2684285..2684476 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C3029_RS13635 | 2684477..2685133 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2685230..2685501 | + | 272 | - | - | Antitoxin |
| - | 2685268..2685371 | - | 104 | - | - | Toxin |
| C3029_RS13645 | 2685528..2685869 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C3029_RS13650 | 2685882..2686754 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| C3029_RS13655 | 2686758..2687132 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C3029_RS13660 | 2687271..2687501 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C3029_RS13665 | 2687603..2688259 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| C3029_RS13670 | 2688283..2688945 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T60499 NZ_CP014269:c2685371-2685268 [Escherichia coli B]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT60499 NZ_CP014269:2685230-2685501 [Escherichia coli B]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
