Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2597646..2597917 Replicon chromosome
Accession NZ_CP014268
Organism Escherichia coli B strain C2566

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2597684..2597787 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2597646..2597917 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C2566_RS13010 2594803..2596242 + 1440 WP_000057022.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
C2566_RS13015 2596360..2596596 + 237 WP_001295499.1 DUF1480 family protein -
C2566_RS13020 2596701..2596892 + 192 WP_001296140.1 YebW family protein -
C2566_RS13025 2596893..2597549 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2597646..2597917 + 272 - - Antitoxin
- 2597684..2597787 - 104 - - Toxin
C2566_RS13035 2597944..2598285 - 342 WP_000976472.1 YebY family protein -
C2566_RS13040 2598298..2599170 - 873 WP_000879293.1 copper homeostasis membrane protein CopD -
C2566_RS13045 2599174..2599548 - 375 WP_000168747.1 CopC domain-containing protein YobA -
C2566_RS13050 2599687..2599917 + 231 WP_000916763.1 DNA polymerase III subunit theta -
C2566_RS13055 2600019..2600675 + 657 WP_000011657.1 carbon-nitrogen hydrolase family protein -
C2566_RS13060 2600699..2601361 + 663 WP_000944245.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T60473 NZ_CP014268:c2597787-2597684 [Escherichia coli B]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT60473 NZ_CP014268:2597646-2597917 [Escherichia coli B]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References