Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 120265..120536 | Replicon | chromosome |
| Accession | NZ_CP014225 | ||
| Organism | Escherichia coli str. K-12 substr. MG1655 strain K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 120303..120406 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 120265..120536 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AW869_RS00640 | 117422..118861 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AW869_RS00645 | 118979..119215 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AW869_RS00650 | 119320..119511 | + | 192 | WP_000457842.1 | YebW family protein | - |
| AW869_RS00655 | 119512..120168 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 120265..120536 | + | 272 | - | - | Antitoxin |
| - | 120303..120406 | - | 104 | - | - | Toxin |
| AW869_RS00665 | 120564..120905 | - | 342 | WP_000976476.1 | YebY family protein | - |
| AW869_RS00670 | 120918..121790 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| AW869_RS00675 | 121794..122168 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AW869_RS00680 | 122307..122537 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AW869_RS00685 | 122639..123295 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AW869_RS00690 | 123319..123981 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T60372 NZ_CP014225:c120406-120303 [Escherichia coli str. K-12 substr. MG1655]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT60372 NZ_CP014225:120265-120536 [Escherichia coli str. K-12 substr. MG1655]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
