Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3353057..3353154 Replicon chromosome
Accession NZ_CP014207
Organism Pantoea ananatis strain R100

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3353057..3353154 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3353057..3353154 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AW734_RS15635 3348276..3349898 - 1623 WP_064373907.1 alpha-glucoside-specific PTS transporter subunit IIBC -
AW734_RS15640 3350178..3350882 + 705 WP_013026057.1 GntR family transcriptional regulator -
AW734_RS15645 3351372..3352916 + 1545 WP_064373909.1 MCP four helix bundle domain-containing protein -
- 3353057..3353154 - 98 - - Toxin
AW734_RS15650 3353269..3353616 - 348 WP_014593872.1 YebY family protein -
AW734_RS15655 3353644..3354519 - 876 WP_019105102.1 copper homeostasis membrane protein CopD -
AW734_RS15660 3354524..3354898 - 375 WP_013026061.1 copper homeostasis periplasmic binding protein CopC -
AW734_RS15665 3355049..3355279 + 231 WP_019105100.1 DNA polymerase III subunit theta -
AW734_RS15670 3355279..3355950 + 672 WP_015700171.1 exodeoxyribonuclease X -
AW734_RS15675 3355934..3358006 - 2073 WP_014605680.1 prolyl oligopeptidase family serine peptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 98 bp

>T60348 NZ_CP014207:c3353154-3353057 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT

Antitoxin


Download         Length: 98 bp

>AT60348 NZ_CP014207:3353057-3353154 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References