Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 833823..834328 Replicon chromosome
Accession NZ_CP014205
Organism Pseudomonas glycinae strain MS586

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag AWU82_RS03775 Protein ID WP_064383937.1
Coordinates 834074..834328 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag AWU82_RS03770 Protein ID WP_064383936.1
Coordinates 833823..834077 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AWU82_RS03745 829143..829508 + 366 WP_064383931.1 hypothetical protein -
AWU82_RS03750 829533..830282 - 750 WP_064383932.1 hypothetical protein -
AWU82_RS03755 830401..830754 + 354 WP_064383933.1 hypothetical protein -
AWU82_RS03760 830888..831634 + 747 WP_064383934.1 hypothetical protein -
AWU82_RS03765 831706..833625 + 1920 WP_064383935.1 alkaline phosphatase family protein -
AWU82_RS03770 833823..834077 + 255 WP_064383936.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
AWU82_RS03775 834074..834328 + 255 WP_064383937.1 Txe/YoeB family addiction module toxin Toxin
AWU82_RS03780 834322..835509 - 1188 WP_064383938.1 aspartate aminotransferase family protein -
AWU82_RS03785 835612..836517 + 906 WP_007956710.1 LysR family transcriptional regulator -
AWU82_RS03790 836592..837116 + 525 WP_064383939.1 hypothetical protein -
AWU82_RS03795 837290..837994 + 705 WP_064383940.1 hypothetical protein -
AWU82_RS03800 838062..838553 - 492 WP_007956714.1 RidA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9908.64 Da        Isoelectric Point: 10.3206

>T60342 WP_064383937.1 NZ_CP014205:834074-834328 [Pseudomonas glycinae]
MKIQFTPTVWEDNLWLQQNDKAGLKRINLLIKAIQRQPFEGLGKPEPLKHNMSGFWSRRITAEHRLVYAIVDGKICVITC
RFHY

Download         Length: 255 bp

>T60342 NZ_CP014205:834074-834328 [Pseudomonas glycinae]
ATGAAAATCCAGTTCACGCCAACGGTCTGGGAAGACAACTTATGGCTTCAGCAAAACGATAAGGCCGGTCTCAAACGAAT
CAATCTTCTGATCAAAGCGATCCAGCGCCAACCCTTTGAAGGCTTGGGTAAACCGGAGCCGCTCAAGCACAACATGAGCG
GCTTCTGGTCACGGCGGATAACTGCCGAGCATCGCCTGGTGTATGCAATCGTAGACGGCAAAATCTGCGTCATAACTTGC
AGATTTCACTACTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9463.90 Da        Isoelectric Point: 4.8140

>AT60342 WP_064383936.1 NZ_CP014205:833823-834077 [Pseudomonas glycinae]
MDTINYTTARAYLAETMDRVNEDCAPLLVTRQKGEPVVMMSLAEYNALEETAYLLRSPANAERLIKSIGEMRAGKAKVRQ
LIEE

Download         Length: 255 bp

>AT60342 NZ_CP014205:833823-834077 [Pseudomonas glycinae]
ATGGACACTATCAACTACACCACAGCTCGTGCGTACTTGGCTGAAACCATGGATCGCGTGAATGAAGACTGCGCCCCACT
TCTGGTAACCCGTCAAAAAGGCGAGCCTGTAGTGATGATGTCTCTGGCCGAATATAACGCGCTGGAAGAAACGGCTTATC
TGCTGCGCTCTCCGGCCAATGCCGAGCGCTTGATCAAATCGATTGGCGAAATGCGCGCTGGAAAAGCCAAAGTCAGGCAA
CTAATTGAAGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References