Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 959480..959627 | Replicon | chromosome |
| Accession | NZ_CP014156 | ||
| Organism | Klebsiella quasipneumoniae strain HKUOPL4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 959484..959586 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 959480..959627 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWV60_RS04655 | 954996..956429 | + | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AWV60_RS04660 | 956546..956785 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AWV60_RS04665 | 956883..957074 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AWV60_RS04670 | 957071..957724 | - | 654 | WP_053810193.1 | protein-serine/threonine phosphatase | - |
| AWV60_RS04675 | 957881..958849 | + | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| AWV60_RS04680 | 958953..959096 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 959480..959627 | + | 148 | - | - | Antitoxin |
| - | 959484..959586 | - | 103 | - | - | Toxin |
| AWV60_RS04685 | 959745..960083 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AWV60_RS04690 | 960100..960969 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| AWV60_RS04695 | 960973..961347 | - | 375 | WP_053810192.1 | CopC domain-containing protein YobA | - |
| AWV60_RS04700 | 961460..961690 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AWV60_RS04705 | 961769..962428 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| AWV60_RS04710 | 962432..964492 | - | 2061 | WP_053810191.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T60287 NZ_CP014156:c959586-959484 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT60287 NZ_CP014156:959480-959627 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
