Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5071034..5071147 | Replicon | chromosome |
| Accession | NZ_CP014136 | ||
| Organism | Gibbsiella quercinecans strain FRB97 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5071053..5071147 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5071034..5071147 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWC35_RS23145 | 5066446..5066718 | + | 273 | WP_121525669.1 | hypothetical protein | - |
| AWC35_RS23150 | 5066706..5067659 | + | 954 | WP_095848466.1 | prolyl aminopeptidase | - |
| AWC35_RS23155 | 5067697..5067927 | - | 231 | WP_095848467.1 | DNA polymerase III subunit theta | - |
| AWC35_RS23160 | 5068333..5068851 | + | 519 | WP_095848468.1 | non-heme ferritin | - |
| AWC35_RS23165 | 5069226..5069609 | + | 384 | WP_095848469.1 | copper homeostasis periplasmic binding protein CopC | - |
| AWC35_RS23170 | 5069613..5070494 | + | 882 | WP_095848470.1 | copper homeostasis membrane protein CopD | - |
| AWC35_RS23175 | 5070566..5070907 | + | 342 | WP_095848471.1 | YebY family protein | - |
| - | 5071034..5071147 | - | 114 | - | - | Antitoxin |
| - | 5071053..5071147 | + | 95 | - | - | Toxin |
| AWC35_RS23185 | 5072285..5072572 | + | 288 | WP_095848472.1 | replication initiation protein | - |
| AWC35_RS23190 | 5072665..5074386 | + | 1722 | WP_095848473.1 | AIPR family protein | - |
| AWC35_RS23195 | 5074825..5075911 | - | 1087 | Protein_4479 | IS3 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T60238 NZ_CP014136:5071053-5071147 [Gibbsiella quercinecans]
TAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
TAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 114 bp
>AT60238 NZ_CP014136:c5071147-5071034 [Gibbsiella quercinecans]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTATTCAGCCATGCACTTTAAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTATTCAGCCATGCACTTTAAG
