Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1850100..1850245 | Replicon | chromosome |
| Accession | NZ_CP014123 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_156 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1850136..1850238 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1850100..1850245 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL516_RS10360 | 1845230..1847290 | + | 2061 | WP_040237002.1 | oligopeptidase B | - |
| AL516_RS10365 | 1847294..1847953 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AL516_RS10370 | 1848032..1848262 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AL516_RS10375 | 1848375..1848749 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AL516_RS10380 | 1848753..1849622 | + | 870 | WP_057774489.1 | copper homeostasis membrane protein CopD | - |
| AL516_RS10385 | 1849639..1849977 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1850100..1850245 | - | 146 | - | - | Antitoxin |
| - | 1850136..1850238 | + | 103 | - | - | Toxin |
| AL516_RS28005 | 1850613..1850756 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AL516_RS10395 | 1850861..1851829 | - | 969 | WP_072158545.1 | VirK/YbjX family protein | - |
| AL516_RS10400 | 1851986..1852639 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| AL516_RS10405 | 1852636..1852827 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AL516_RS10410 | 1852925..1853164 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AL516_RS10415 | 1853280..1854713 | - | 1434 | WP_040236949.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T60201 NZ_CP014123:1850136-1850238 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT60201 NZ_CP014123:c1850245-1850100 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
