Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1157007..1157275 Replicon chromosome
Accession NZ_CP014111
Organism Escherichia coli strain FDAARGOS_144

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1157045..1157147 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1157007..1157275 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AL502_RS07005 1154165..1155604 + 1440 WP_024186841.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
AL502_RS07010 1155721..1155957 + 237 WP_001295499.1 DUF1480 family protein -
AL502_RS07015 1156062..1156253 + 192 WP_001296140.1 YebW family protein -
AL502_RS07020 1156254..1156910 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 1157007..1157275 + 269 - - Antitoxin
- 1157045..1157147 - 103 - - Toxin
AL502_RS07025 1157305..1157646 - 342 WP_000976472.1 YebY family protein -
AL502_RS07030 1157659..1158531 - 873 WP_000879320.1 copper homeostasis membrane protein CopD -
AL502_RS07035 1158535..1158909 - 375 WP_000255065.1 CopC domain-containing protein YobA -
AL502_RS07040 1159048..1159278 + 231 WP_000916763.1 DNA polymerase III subunit theta -
AL502_RS07045 1159380..1160036 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
AL502_RS07050 1160060..1160722 + 663 WP_000944249.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T60150 NZ_CP014111:c1157147-1157045 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT60150 NZ_CP014111:1157007-1157275 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References