Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1717695..1718223 | Replicon | chromosome |
| Accession | NZ_CP014094 | ||
| Organism | Vibrio diabolicus strain FDAARGOS_96 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | K5TRR0 |
| Locus tag | AL552_RS09155 | Protein ID | WP_005377002.1 |
| Coordinates | 1717933..1718223 (+) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR02 |
| Locus tag | AL552_RS09150 | Protein ID | WP_005377003.1 |
| Coordinates | 1717695..1717943 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL552_RS09115 | 1713614..1713706 | - | 93 | WP_104969511.1 | DUF3265 domain-containing protein | - |
| AL552_RS09125 | 1714312..1714818 | - | 507 | WP_104969513.1 | hypothetical protein | - |
| AL552_RS09130 | 1715052..1715459 | - | 408 | WP_104969514.1 | OsmC family protein | - |
| AL552_RS09135 | 1715509..1715601 | - | 93 | WP_192943636.1 | DUF3265 domain-containing protein | - |
| AL552_RS09140 | 1715639..1716163 | - | 525 | WP_192943637.1 | GNAT family N-acetyltransferase | - |
| AL552_RS09145 | 1716286..1717497 | - | 1212 | WP_104969516.1 | hypothetical protein | - |
| AL552_RS09150 | 1717695..1717943 | + | 249 | WP_005377003.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| AL552_RS09155 | 1717933..1718223 | + | 291 | WP_005377002.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| AL552_RS09170 | 1718855..1718944 | - | 90 | WP_079740870.1 | DUF3265 domain-containing protein | - |
| AL552_RS09175 | 1719513..1719986 | - | 474 | WP_104969518.1 | hypothetical protein | - |
| AL552_RS09180 | 1720141..1720617 | - | 477 | WP_057619450.1 | GNAT family N-acetyltransferase | - |
| AL552_RS09185 | 1720645..1720734 | - | 90 | WP_074190757.1 | DUF3265 domain-containing protein | - |
| AL552_RS25445 | 1720824..1721222 | + | 399 | WP_192943638.1 | hypothetical protein | - |
| AL552_RS09205 | 1721736..1721828 | - | 93 | WP_078511404.1 | DUF3265 domain-containing protein | - |
| AL552_RS09210 | 1721843..1722406 | - | 564 | WP_104969519.1 | DUF4145 domain-containing protein | - |
| AL552_RS09215 | 1722433..1722522 | - | 90 | WP_104970061.1 | DUF3265 domain-containing protein | - |
| AL552_RS09220 | 1722540..1723007 | - | 468 | WP_146107134.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1657924..1780566 | 122642 | |
| - | inside | Integron | - | - | 1667319..1779447 | 112128 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11261.25 Da Isoelectric Point: 10.5932
>T60119 WP_005377002.1 NZ_CP014094:1717933-1718223 [Vibrio diabolicus]
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
Download Length: 291 bp
>T60119 NZ_CP014094:1717933-1718223 [Vibrio diabolicus]
ATGACCTATAAACTCGACTTTAAAAAGAGCGCACTCAAAGAGTGGAAAAAGCTTGGTTCTACTCTGCAACAACAATTTAA
GAAAAAGCTAATCGAGCGCTTAGATAACCCACATGTTCCAGCTTCAAAACTTTCTGGAGCTGACAACATGTATAAAATTA
AGTTGCGTCAATCGGGCTACCGTCTCGTCTACAAAGTTGAAGACGATGTCATCATTGTAACCGTCTTAGCAGTCGGAAAA
CGAGAACGTAGCGATGTTTACCGTAAAGCCATGAAAAGGTTAGATGATTGA
ATGACCTATAAACTCGACTTTAAAAAGAGCGCACTCAAAGAGTGGAAAAAGCTTGGTTCTACTCTGCAACAACAATTTAA
GAAAAAGCTAATCGAGCGCTTAGATAACCCACATGTTCCAGCTTCAAAACTTTCTGGAGCTGACAACATGTATAAAATTA
AGTTGCGTCAATCGGGCTACCGTCTCGTCTACAAAGTTGAAGACGATGTCATCATTGTAACCGTCTTAGCAGTCGGAAAA
CGAGAACGTAGCGATGTTTACCGTAAAGCCATGAAAAGGTTAGATGATTGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9079.37 Da Isoelectric Point: 3.9610
>AT60119 WP_005377003.1 NZ_CP014094:1717695-1717943 [Vibrio diabolicus]
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
Download Length: 249 bp
>AT60119 NZ_CP014094:1717695-1717943 [Vibrio diabolicus]
ATGACCACTAGAATATTAGCCGATGTTGCTGCAAGCATTACCGAGTTGAAAGCTAACCCTATGAAAGTTGCAACTAGTGC
TTATGGCGAACCTGTTGCTGTATTGAACCGAAATGAGCCAGCATTTTATTGCGTACCTGCCGAAGCGTACGAAATGATGA
TGGACAGACTCGAAGATCTTGAACTACTAGCTATCGCTAAAGAGCGTGAATCTGAAGAGAGCATTTCGGTAAATATTGAT
GACCTATAA
ATGACCACTAGAATATTAGCCGATGTTGCTGCAAGCATTACCGAGTTGAAAGCTAACCCTATGAAAGTTGCAACTAGTGC
TTATGGCGAACCTGTTGCTGTATTGAACCGAAATGAGCCAGCATTTTATTGCGTACCTGCCGAAGCGTACGAAATGATGA
TGGACAGACTCGAAGATCTTGAACTACTAGCTATCGCTAAAGAGCGTGAATCTGAAGAGAGCATTTCGGTAAATATTGAT
GACCTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR03 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR02 |