Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4184799..4184946 | Replicon | chromosome |
| Accession | NZ_CP014071 | ||
| Organism | Klebsiella quasipneumoniae strain FDAARGOS_93 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4184803..4184905 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4184799..4184946 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL473_RS20905 | 4180315..4181748 | + | 1434 | WP_004203381.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AL473_RS20910 | 4181865..4182104 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AL473_RS20915 | 4182202..4182393 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AL473_RS20920 | 4182390..4183043 | - | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| AL473_RS20925 | 4183200..4184168 | + | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| AL473_RS28090 | 4184272..4184415 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 4184799..4184946 | + | 148 | - | - | Antitoxin |
| - | 4184803..4184905 | - | 103 | - | - | Toxin |
| AL473_RS20935 | 4185064..4185402 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AL473_RS20940 | 4185419..4186288 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| AL473_RS20945 | 4186292..4186666 | - | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| AL473_RS20950 | 4186779..4187009 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AL473_RS20955 | 4187088..4187747 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| AL473_RS20960 | 4187751..4189811 | - | 2061 | WP_004203388.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T60109 NZ_CP014071:c4184905-4184803 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT60109 NZ_CP014071:4184799-4184946 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
