Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2748257..2748406 | Replicon | chromosome |
| Accession | NZ_CP014070 | ||
| Organism | Citrobacter amalonaticus strain FDAARGOS_165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2748297..2748400 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2748257..2748406 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL524_RS39165 | 2744712..2745374 | - | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
| AL524_RS39170 | 2745398..2746060 | - | 663 | WP_061070012.1 | carbon-nitrogen hydrolase family protein | - |
| AL524_RS39175 | 2746169..2746399 | - | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| AL524_RS39180 | 2746537..2746911 | + | 375 | WP_044326804.1 | CopC domain-containing protein YobA | - |
| AL524_RS39185 | 2746914..2747786 | + | 873 | WP_061070013.1 | copper homeostasis membrane protein CopD | - |
| AL524_RS39190 | 2747803..2748141 | + | 339 | WP_043000379.1 | YebY family protein | - |
| - | 2748257..2748406 | - | 150 | - | - | Antitoxin |
| - | 2748297..2748400 | + | 104 | - | - | Toxin |
| AL524_RS39195 | 2748551..2749213 | + | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| AL524_RS39200 | 2749214..2749405 | - | 192 | WP_043000391.1 | YebW family protein | - |
| AL524_RS39205 | 2749507..2749743 | - | 237 | WP_161215572.1 | DUF1480 family protein | - |
| AL524_RS39210 | 2749858..2751399 | - | 1542 | WP_071888390.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T60092 NZ_CP014070:2748297-2748400 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 150 bp
>AT60092 NZ_CP014070:c2748406-2748257 [Citrobacter amalonaticus]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
