Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 827030..827589 | Replicon | chromosome |
| Accession | NZ_CP014053 | ||
| Organism | Vibrio alginolyticus strain FDAARGOS_108 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A347UR22 |
| Locus tag | AL539_RS05155 | Protein ID | WP_005398411.1 |
| Coordinates | 827311..827589 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR21 |
| Locus tag | AL539_RS05150 | Protein ID | WP_005398409.1 |
| Coordinates | 827030..827314 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL539_RS05110 | 822560..822649 | - | 90 | WP_077345960.1 | DUF3265 domain-containing protein | - |
| AL539_RS05115 | 823233..823613 | - | 381 | WP_104975408.1 | STAS/SEC14 domain-containing protein | - |
| AL539_RS05120 | 823837..824127 | - | 291 | WP_104975409.1 | hypothetical protein | - |
| AL539_RS05125 | 824274..824672 | - | 399 | WP_104975410.1 | SMI1/KNR4 family protein | - |
| AL539_RS05130 | 824789..825748 | - | 960 | WP_104975411.1 | phosphotransferase | - |
| AL539_RS05140 | 826294..826709 | - | 416 | Protein_747 | hypothetical protein | - |
| AL539_RS05145 | 826861..826953 | - | 93 | WP_104975412.1 | DUF3265 domain-containing protein | - |
| AL539_RS05150 | 827030..827314 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| AL539_RS05155 | 827311..827589 | + | 279 | WP_005398411.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| AL539_RS05160 | 827726..828262 | - | 537 | WP_104975413.1 | nucleotidyltransferase family protein | - |
| AL539_RS05165 | 828288..828380 | - | 93 | WP_072829169.1 | DUF3265 domain-containing protein | - |
| AL539_RS05175 | 828650..829180 | - | 531 | WP_049538686.1 | hypothetical protein | - |
| AL539_RS05180 | 829887..829979 | - | 93 | WP_079725895.1 | DUF3265 domain-containing protein | - |
| AL539_RS05185 | 829994..831004 | - | 1011 | WP_104975415.1 | 5'-nucleotidase | - |
| AL539_RS26340 | 831651..831902 | - | 252 | WP_128740517.1 | hypothetical protein | - |
| AL539_RS05205 | 831910..832248 | - | 339 | WP_104975418.1 | hypothetical protein | - |
| AL539_RS05210 | 832287..832412 | - | 126 | WP_104976012.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 787032..862540 | 75508 | |
| - | inside | Integron | - | - | 796577..861422 | 64845 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10891.57 Da Isoelectric Point: 4.3430
>T60039 WP_005398411.1 NZ_CP014053:827311-827589 [Vibrio alginolyticus]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T60039 NZ_CP014053:827311-827589 [Vibrio alginolyticus]
ATGATTTTATGGGAAGAAGAGTCACTTAATGATCGTGAAAAGATCTTCGAGTTTCTCTATGACTTTAACCCTGATGCGGC
AGAAAAAACTGACAACCTTATTGAAGCAAAAGTAGAAAACTTGCTTGAACAACCTTTAATGGGTGTACAACGAGATGGCA
TCCGCGGACGATTGCTCATTATTCCTGAGATTTCGATGATTGTCTCTTACTGGGTCGAGGGCGATATCATCCGAGTTATG
CGTGTACTCCACCAAAAACAAAAATTTCCTACAGATTGA
ATGATTTTATGGGAAGAAGAGTCACTTAATGATCGTGAAAAGATCTTCGAGTTTCTCTATGACTTTAACCCTGATGCGGC
AGAAAAAACTGACAACCTTATTGAAGCAAAAGTAGAAAACTTGCTTGAACAACCTTTAATGGGTGTACAACGAGATGGCA
TCCGCGGACGATTGCTCATTATTCCTGAGATTTCGATGATTGTCTCTTACTGGGTCGAGGGCGATATCATCCGAGTTATG
CGTGTACTCCACCAAAAACAAAAATTTCCTACAGATTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 11069.40 Da Isoelectric Point: 9.2167
>AT60039 WP_005398409.1 NZ_CP014053:827030-827314 [Vibrio alginolyticus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT60039 NZ_CP014053:827030-827314 [Vibrio alginolyticus]
ATGGACACTAGAATTCAATTTCGTGTTGATGAAGAAACAAAACGCCTAGCTCAACAAATGGCTGAAAGCCAAGGTCGAAC
TCTAAGTGATGCTTGCCGTGAACTTACTGAGCAACTCGCTGAACAACAAAGAAAAACATTATCTCACGATGCATGGCTAA
CTGAACAAGTAAACCTAGCATTTGAGAAGTTTGACTCAGGAAAATCCGTTTTCGTTGAGCACCAAACTGCTAAGTCTCGA
ATGGAAGAGCGCAAAGCCAGAATCCGTAATCGAGGTAAGCAATGA
ATGGACACTAGAATTCAATTTCGTGTTGATGAAGAAACAAAACGCCTAGCTCAACAAATGGCTGAAAGCCAAGGTCGAAC
TCTAAGTGATGCTTGCCGTGAACTTACTGAGCAACTCGCTGAACAACAAAGAAAAACATTATCTCACGATGCATGGCTAA
CTGAACAAGTAAACCTAGCATTTGAGAAGTTTGACTCAGGAAAATCCGTTTTCGTTGAGCACCAAACTGCTAAGTCTCGA
ATGGAAGAGCGCAAAGCCAGAATCCGTAATCGAGGTAAGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR22 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR21 |