Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-Phd |
| Location | 1141919..1142497 | Replicon | chromosome |
| Accession | NZ_CP014042 | ||
| Organism | Vibrio mimicus strain FDAARGOS_112 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | AL543_RS05400 | Protein ID | WP_001913968.1 |
| Coordinates | 1142180..1142497 (+) | Length | 106 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | Q7DCR7 |
| Locus tag | AL543_RS05395 | Protein ID | WP_000557292.1 |
| Coordinates | 1141919..1142161 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL543_RS05340 | 1137172..1137624 | - | 453 | WP_061051342.1 | hypothetical protein | - |
| AL543_RS05345 | 1137653..1137742 | - | 90 | WP_080544961.1 | DUF3265 domain-containing protein | - |
| AL543_RS05350 | 1137765..1138106 | - | 342 | WP_061051343.1 | hypothetical protein | - |
| AL543_RS05360 | 1138311..1138493 | - | 183 | Protein_1039 | DUF645 family protein | - |
| AL543_RS05365 | 1138876..1139370 | + | 495 | WP_081096064.1 | hypothetical protein | - |
| AL543_RS05370 | 1139535..1139929 | - | 395 | Protein_1041 | DUF3465 domain-containing protein | - |
| AL543_RS05375 | 1140105..1140518 | - | 414 | WP_061051344.1 | GNAT family N-acetyltransferase | - |
| AL543_RS05380 | 1140676..1141152 | - | 477 | WP_061051345.1 | GNAT family N-acetyltransferase | - |
| AL543_RS21470 | 1141347..1141403 | - | 57 | WP_114733427.1 | DUF645 family protein | - |
| AL543_RS05385 | 1141404..1141530 | - | 127 | Protein_1045 | DUF645 family protein | - |
| AL543_RS05395 | 1141919..1142161 | + | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| AL543_RS05400 | 1142180..1142497 | + | 318 | WP_001913968.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| AL543_RS05405 | 1142523..1142645 | - | 123 | WP_095472961.1 | DUF3265 domain-containing protein | - |
| AL543_RS05410 | 1142642..1143232 | - | 591 | WP_079993831.1 | hypothetical protein | - |
| AL543_RS05415 | 1143503..1143715 | - | 213 | WP_104408345.1 | DUF3709 domain-containing protein | - |
| AL543_RS05425 | 1144032..1144946 | - | 915 | WP_061051346.1 | hypothetical protein | - |
| AL543_RS05430 | 1145037..1145129 | - | 93 | WP_079750045.1 | DUF3265 domain-containing protein | - |
| AL543_RS05435 | 1145144..1145461 | - | 318 | WP_061051347.1 | heavy metal-binding domain-containing protein | - |
| AL543_RS21475 | 1145657..1145695 | - | 39 | WP_108244118.1 | hypothetical protein | - |
| AL543_RS05445 | 1145711..1145838 | - | 128 | Protein_1055 | DUF645 family protein | - |
| AL543_RS05450 | 1146024..1146116 | - | 93 | WP_208620267.1 | DUF3265 domain-containing protein | - |
| AL543_RS21480 | 1146142..1146603 | - | 462 | WP_061051348.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1086679..1234651 | 147972 | |
| - | inside | Integron | - | - | 1108123..1230683 | 122560 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 106 a.a. Molecular weight: 12159.96 Da Isoelectric Point: 9.5425
>T60009 WP_001913968.1 NZ_CP014042:1142180-1142497 [Vibrio mimicus]
MQNKQYKLSQLAQEHLLKIKHYTIENFAEAQWQKYKSTLLSGFQTLADNPGLGKSCEDIYQNGFYFPVGKHMAYYTKEAD
FILIVAVLGQSQLPQKHLKQSRFVS
MQNKQYKLSQLAQEHLLKIKHYTIENFAEAQWQKYKSTLLSGFQTLADNPGLGKSCEDIYQNGFYFPVGKHMAYYTKEAD
FILIVAVLGQSQLPQKHLKQSRFVS
Download Length: 318 bp
>T60009 NZ_CP014042:1142180-1142497 [Vibrio mimicus]
ATGCAAAATAAACAATATAAGCTCAGCCAATTAGCCCAAGAGCACTTACTCAAGATTAAACACTACACCATTGAAAATTT
CGCTGAAGCGCAGTGGCAAAAATATAAGTCGACCTTGCTTTCAGGTTTCCAAACTCTAGCGGATAACCCAGGACTAGGAA
AAAGCTGTGAAGATATTTACCAAAATGGTTTTTACTTTCCAGTGGGGAAACACATGGCTTATTACACCAAAGAAGCAGAC
TTCATTCTCATTGTTGCGGTATTAGGGCAATCACAGCTGCCCCAAAAGCATCTCAAACAGTCACGCTTTGTTTCTTAG
ATGCAAAATAAACAATATAAGCTCAGCCAATTAGCCCAAGAGCACTTACTCAAGATTAAACACTACACCATTGAAAATTT
CGCTGAAGCGCAGTGGCAAAAATATAAGTCGACCTTGCTTTCAGGTTTCCAAACTCTAGCGGATAACCCAGGACTAGGAA
AAAGCTGTGAAGATATTTACCAAAATGGTTTTTACTTTCCAGTGGGGAAACACATGGCTTATTACACCAAAGAAGCAGAC
TTCATTCTCATTGTTGCGGTATTAGGGCAATCACAGCTGCCCCAAAAGCATCTCAAACAGTCACGCTTTGTTTCTTAG
Antitoxin
Download Length: 81 a.a. Molecular weight: 8961.25 Da Isoelectric Point: 5.6630
>AT60009 WP_000557292.1 NZ_CP014042:1141919-1142161 [Vibrio mimicus]
MHTLTANDAKRNFGELLLSAQREPVIISKNSKNTVVVMSIKDFEELEAMKLDYLKHCFESAQKDLDSGKTVDGATFLNTL
MHTLTANDAKRNFGELLLSAQREPVIISKNSKNTVVVMSIKDFEELEAMKLDYLKHCFESAQKDLDSGKTVDGATFLNTL
Download Length: 243 bp
>AT60009 NZ_CP014042:1141919-1142161 [Vibrio mimicus]
ATGCACACACTAACAGCAAATGATGCTAAACGAAATTTTGGTGAACTTCTTCTAAGCGCACAACGCGAACCTGTCATCAT
CAGCAAAAACAGTAAGAATACTGTCGTTGTCATGTCCATTAAGGACTTTGAAGAACTTGAAGCAATGAAACTCGATTATC
TCAAACACTGCTTTGAGTCTGCTCAGAAAGACTTAGATAGTGGCAAAACCGTTGATGGTGCCACTTTTCTAAACACCCTT
TGA
ATGCACACACTAACAGCAAATGATGCTAAACGAAATTTTGGTGAACTTCTTCTAAGCGCACAACGCGAACCTGTCATCAT
CAGCAAAAACAGTAAGAATACTGTCGTTGTCATGTCCATTAAGGACTTTGAAGAACTTGAAGCAATGAAACTCGATTATC
TCAAACACTGCTTTGAGTCTGCTCAGAAAGACTTAGATAGTGGCAAAACCGTTGATGGTGCCACTTTTCTAAACACCCTT
TGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|