Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3229286..3229429 Replicon chromosome
Accession NZ_CP014031
Organism Hafnia paralvei strain FDAARGOS_158

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3229288..3229391 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3229286..3229429 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AL518_RS14715 3225100..3226521 + 1422 WP_061060012.1 DUF4431 domain-containing protein -
AL518_RS14720 3226663..3227004 + 342 WP_008813596.1 DHCW motif cupin fold protein -
AL518_RS14730 3227342..3227890 - 549 WP_061060013.1 GNAT family N-acetyltransferase -
AL518_RS14735 3228156..3229052 - 897 WP_061060014.1 sel1 repeat family protein -
- 3229286..3229429 + 144 - - Antitoxin
- 3229288..3229391 - 104 - - Toxin
AL518_RS14740 3229799..3232429 - 2631 WP_039186620.1 PqiB family protein -
AL518_RS14745 3232398..3233642 - 1245 WP_061060015.1 membrane integrity lipid transport subunit YebS -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T59985 NZ_CP014031:c3229391-3229288 [Hafnia paralvei]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCTGATAC
AGGAGTCGTATCAGGTCTTTTTTT

Antitoxin


Download         Length: 144 bp

>AT59985 NZ_CP014031:3229286-3229429 [Hafnia paralvei]
ATAAAAAAAGACCTGATACGACTCCTGTATCAGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTGGATTGCCTTGCTATTTAATAGTAGTCGACGATGCTTTTTTTTCCAGTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References