Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2995215..2995422 | Replicon | chromosome |
| Accession | NZ_CP014030 | ||
| Organism | Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2995217..2995320 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2995215..2995422 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL515_RS14640 | 2990546..2990782 | + | 237 | WP_192575279.1 | DUF1480 family protein | - |
| AL515_RS14645 | 2990810..2992048 | - | 1239 | WP_082759583.1 | MFS transporter | - |
| AL515_RS14650 | 2992118..2993035 | + | 918 | WP_061068065.1 | LysR family transcriptional regulator | - |
| AL515_RS14655 | 2993108..2993299 | + | 192 | WP_048211387.1 | YebW family protein | - |
| AL515_RS14660 | 2993300..2993941 | - | 642 | WP_061068066.1 | protein-serine/threonine phosphatase | - |
| AL515_RS14665 | 2994030..2994860 | - | 831 | WP_061068067.1 | GIY-YIG nuclease family protein | - |
| - | 2995215..2995422 | + | 208 | - | - | Antitoxin |
| - | 2995217..2995320 | - | 104 | - | - | Toxin |
| AL515_RS14670 | 2995476..2995814 | - | 339 | WP_061068068.1 | YebY family protein | - |
| AL515_RS14675 | 2995835..2996707 | - | 873 | WP_061068069.1 | copper homeostasis membrane protein CopD | - |
| AL515_RS14680 | 2996711..2997085 | - | 375 | WP_044711069.1 | CopC domain-containing protein YobA | - |
| AL515_RS14685 | 2997228..2997458 | + | 231 | WP_005120732.1 | DNA polymerase III subunit theta | - |
| AL515_RS14690 | 2997565..2998221 | + | 657 | WP_061068070.1 | carbon-nitrogen hydrolase family protein | - |
| AL515_RS14695 | 2998244..2998906 | + | 663 | WP_061068071.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2986252..3017153 | 30901 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T59970 NZ_CP014030:c2995320-2995217 [Citrobacter sp. FDAARGOS_156]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 208 bp
>AT59970 NZ_CP014030:2995215-2995422 [Citrobacter sp. FDAARGOS_156]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGTCTG
AAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGTCTG
AAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
