Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4770833..4770977 | Replicon | chromosome |
| Accession | NZ_CP014015 | ||
| Organism | Citrobacter amalonaticus strain FDAARGOS_122 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4770839..4770942 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4770833..4770977 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL479_RS23010 | 4767841..4769382 | + | 1542 | WP_071887689.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AL479_RS23015 | 4769497..4769733 | + | 237 | WP_167382411.1 | DUF1480 family protein | - |
| AL479_RS23020 | 4769835..4770026 | + | 192 | WP_061077801.1 | YebW family protein | - |
| AL479_RS23025 | 4770027..4770689 | - | 663 | WP_061077802.1 | protein-serine/threonine phosphatase | - |
| - | 4770833..4770977 | + | 145 | - | - | Antitoxin |
| - | 4770839..4770942 | - | 104 | - | - | Toxin |
| AL479_RS23030 | 4771098..4771436 | - | 339 | WP_061077803.1 | YebY family protein | - |
| AL479_RS23035 | 4771453..4772325 | - | 873 | WP_061077804.1 | copper homeostasis membrane protein CopD | - |
| AL479_RS23040 | 4772328..4772702 | - | 375 | WP_061077805.1 | CopC domain-containing protein YobA | - |
| AL479_RS23045 | 4772840..4773070 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| AL479_RS23050 | 4773179..4773835 | + | 657 | WP_061077806.1 | carbon-nitrogen hydrolase family protein | - |
| AL479_RS23055 | 4773859..4774521 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T59900 NZ_CP014015:c4770942-4770839 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT59900 NZ_CP014015:4770833-4770977 [Citrobacter amalonaticus]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
