Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3356957..3357102 | Replicon | chromosome |
| Accession | NZ_CP014010 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain RJF999 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3356964..3357066 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3356957..3357102 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RJF9_RS16465 | 3352489..3353922 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RJF9_RS16470 | 3354038..3354277 | + | 240 | WP_002911393.1 | YebV family protein | - |
| RJF9_RS16475 | 3354375..3354566 | + | 192 | WP_002911395.1 | YebW family protein | - |
| RJF9_RS16480 | 3354563..3355216 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| RJF9_RS16485 | 3355373..3356341 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| RJF9_RS30975 | 3356446..3356589 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3356957..3357102 | + | 146 | - | - | Antitoxin |
| - | 3356964..3357066 | - | 103 | - | - | Toxin |
| RJF9_RS16495 | 3357225..3357563 | - | 339 | WP_002911404.1 | YebY family protein | - |
| RJF9_RS16500 | 3357580..3358449 | - | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| RJF9_RS16505 | 3358453..3358827 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| RJF9_RS16510 | 3358940..3359170 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| RJF9_RS16515 | 3359249..3359908 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| RJF9_RS16520 | 3359912..3361972 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T59873 NZ_CP014010:c3357066-3356964 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT59873 NZ_CP014010:3356957-3357102 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
