Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 4984379..4985084 Replicon chromosome
Accession NZ_CP014007
Organism Kosakonia oryzae strain Ola 51

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag AWR26_RS23365 Protein ID WP_064568758.1
Coordinates 4984698..4985084 (-) Length 129 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag AWR26_RS23360 Protein ID WP_064568757.1
Coordinates 4984379..4984705 (-) Length 109 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AWR26_RS23345 4980028..4980723 + 696 WP_007372511.1 ribulose-phosphate 3-epimerase -
AWR26_RS23350 4980707..4981654 + 948 WP_064568755.1 allose kinase -
AWR26_RS23355 4981608..4984172 - 2565 WP_064568756.1 response regulator -
AWR26_RS23360 4984379..4984705 - 327 WP_064568757.1 helix-turn-helix domain-containing protein Antitoxin
AWR26_RS23365 4984698..4985084 - 387 WP_064568758.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AWR26_RS23370 4985307..4986830 + 1524 WP_064568759.1 sugar ABC transporter ATP-binding protein -
AWR26_RS23375 4986823..4987812 + 990 WP_064568760.1 ribose ABC transporter permease -
AWR26_RS23380 4987853..4988794 + 942 WP_043955595.1 ABC transporter substrate-binding protein -
AWR26_RS23385 4988841..4989527 + 687 WP_064568761.1 D-lyxose/D-mannose family sugar isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(1-124)

Antitoxin

Cro/C1-type helix-turn-helix domain

(53-92)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 13626.71 Da        Isoelectric Point: 9.6721

>T59844 WP_064568758.1 NZ_CP014007:c4985084-4984698 [Kosakonia oryzae]
MAIYVLKAFDKNTKGDGIDDAALCKAAQEVISGKYEASLGGGVFKKRIPLPGTGKSGGARAVIAFKMGKHLFFLNGYAKS
ATSSNGKEIPDDVLKAYRKFAADLFGMTQAQIDAQVQAETMREVKCDG

Download         Length: 387 bp

>T59844 NZ_CP014007:c4985084-4984698 [Kosakonia oryzae]
ATGGCTATTTATGTTTTAAAGGCGTTCGATAAGAACACCAAAGGCGATGGAATTGATGACGCAGCACTATGTAAAGCAGC
ACAGGAAGTCATTAGCGGAAAGTATGAGGCCAGCCTGGGTGGGGGTGTTTTTAAGAAGCGTATTCCACTTCCAGGCACTG
GGAAAAGTGGTGGCGCGCGAGCTGTTATCGCGTTCAAAATGGGAAAGCATTTATTCTTTTTAAACGGCTATGCCAAGTCT
GCCACTAGCAGTAATGGCAAAGAGATCCCGGATGATGTATTGAAGGCTTACCGTAAATTTGCTGCCGATTTATTCGGTAT
GACGCAAGCGCAGATAGATGCTCAAGTCCAGGCAGAAACGATGCGAGAGGTAAAATGCGATGGTTGA

Antitoxin


Download         Length: 109 a.a.        Molecular weight: 12223.12 Da        Isoelectric Point: 6.7285

>AT59844 WP_064568757.1 NZ_CP014007:c4984705-4984379 [Kosakonia oryzae]
MVDHLKDLQEMAHDMFPHGGISEDTVNYIDARVKLRELRARLPAIVEMDGEAIRALRGRYNLSQAMLAEYVNMSVVTISK
WERGEKKPNGAALRVLNTLSDKGPEIFI

Download         Length: 327 bp

>AT59844 NZ_CP014007:c4984705-4984379 [Kosakonia oryzae]
ATGGTTGACCATCTGAAAGATTTGCAGGAAATGGCGCACGATATGTTTCCCCATGGTGGTATTTCTGAAGACACCGTTAA
CTACATTGACGCTCGCGTAAAACTGCGTGAGTTGCGTGCACGTTTGCCTGCTATCGTTGAAATGGATGGCGAGGCAATCC
GCGCCCTTCGTGGGCGCTATAACCTCAGCCAGGCTATGCTGGCTGAATATGTGAACATGTCAGTCGTGACCATTTCAAAA
TGGGAGAGAGGAGAAAAAAAACCGAACGGTGCAGCTCTCCGGGTGCTTAACACTCTTTCTGATAAAGGGCCGGAAATCTT
TATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References