Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2196894..2197060 | Replicon | chromosome |
| Accession | NZ_CP014007 | ||
| Organism | Kosakonia oryzae strain Ola 51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2196954..2197056 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2196894..2197060 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWR26_RS10415 | 2192094..2194154 | + | 2061 | WP_064565652.1 | oligopeptidase B | - |
| AWR26_RS10420 | 2194151..2194813 | - | 663 | WP_064565654.1 | exodeoxyribonuclease X | - |
| AWR26_RS10425 | 2194825..2195055 | - | 231 | WP_043953224.1 | DNA polymerase III subunit theta | - |
| AWR26_RS10430 | 2195193..2195567 | + | 375 | WP_064565656.1 | CopC domain-containing protein YobA | - |
| AWR26_RS10435 | 2195571..2196440 | + | 870 | WP_064565658.1 | copper homeostasis membrane protein CopD | - |
| AWR26_RS10440 | 2196459..2196797 | + | 339 | WP_064565660.1 | YebY family protein | - |
| - | 2196894..2197060 | - | 167 | - | - | Antitoxin |
| - | 2196954..2197056 | + | 103 | - | - | Toxin |
| AWR26_RS10445 | 2197134..2197652 | - | 519 | WP_064568992.1 | tyrosine-type recombinase/integrase | - |
| AWR26_RS10450 | 2197979..2198707 | - | 729 | WP_064565662.1 | hypothetical protein | - |
| AWR26_RS25590 | 2199170..2199866 | + | 697 | Protein_2066 | transposase | - |
| AWR26_RS25595 | 2199956..2200045 | - | 90 | Protein_2067 | nuclear transport factor 2 family protein | - |
| AWR26_RS10465 | 2200252..2200782 | + | 531 | WP_064565665.1 | lipocalin family protein | - |
| AWR26_RS10470 | 2200888..2201676 | - | 789 | WP_064568993.1 | MipA/OmpV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2199170..2199448 | 278 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T59831 NZ_CP014007:2196954-2197056 [Kosakonia oryzae]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT59831 NZ_CP014007:c2197060-2196894 [Kosakonia oryzae]
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGAA
AGAAAAA
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGAA
AGAAAAA
