Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 857852..858515 Replicon chromosome
Accession NZ_CP014007
Organism Kosakonia oryzae strain Ola 51

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag AWR26_RS04165 Protein ID WP_043956668.1
Coordinates 858099..858515 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag AWR26_RS04160 Protein ID WP_064563820.1
Coordinates 857852..858118 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AWR26_RS04140 853297..854730 - 1434 WP_064563816.1 6-phospho-beta-glucosidase BglA -
AWR26_RS04145 854847..855575 - 729 WP_007370250.1 MurR/RpiR family transcriptional regulator -
AWR26_RS04150 855924..856583 + 660 WP_007370251.1 hemolysin III family protein -
AWR26_RS04155 856623..857603 - 981 WP_064563818.1 tRNA-modifying protein YgfZ -
AWR26_RS04160 857852..858118 + 267 WP_064563820.1 FAD assembly factor SdhE Antitoxin
AWR26_RS04165 858099..858515 + 417 WP_043956668.1 protein YgfX Toxin
AWR26_RS04170 858534..859055 - 522 WP_064563822.1 flavodoxin FldB -
AWR26_RS04175 859156..860052 + 897 WP_064563824.1 site-specific tyrosine recombinase XerD -
AWR26_RS04180 860077..860790 + 714 WP_007370257.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
AWR26_RS04185 860796..862529 + 1734 WP_064563825.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 16318.25 Da        Isoelectric Point: 10.7373

>T59829 WP_043956668.1 NZ_CP014007:858099-858515 [Kosakonia oryzae]
VVLWQSELRVSWRAQWISLLLHGLGAALILLMPWPLSYTPLWLLLLSLVVFDCVRSQRRINACHGELKLLMDSRLRWQGV
EWDIIGTPWMLRSGMMLRLRREEDGRRQHLWLAADSMDAQEWRDLRRVISQKPAQGLH

Download         Length: 417 bp

>T59829 NZ_CP014007:858099-858515 [Kosakonia oryzae]
GTGGTCCTGTGGCAATCTGAGTTACGCGTCTCCTGGCGCGCACAATGGATCTCGCTTTTGCTCCACGGTCTGGGCGCAGC
ACTCATTTTGCTGATGCCCTGGCCTTTGAGTTACACACCGCTGTGGCTGCTGTTGCTGTCGCTGGTGGTTTTTGATTGCG
TGCGCAGCCAGCGGCGGATCAATGCCTGCCATGGCGAGCTCAAACTGCTGATGGATTCCCGCCTGCGCTGGCAGGGCGTG
GAATGGGATATTATCGGAACGCCGTGGATGTTACGCAGTGGAATGATGCTGCGCTTGCGCCGTGAAGAGGATGGGCGTCG
TCAACATTTATGGTTGGCGGCAGACAGCATGGATGCGCAGGAGTGGCGCGATCTGCGCCGGGTAATATCACAGAAACCGG
CGCAGGGGCTGCATTAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10456.88 Da        Isoelectric Point: 5.1069

>AT59829 WP_064563820.1 NZ_CP014007:857852-858118 [Kosakonia oryzae]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDTLSDDDKQLFVRLLESDDPDLFNWLMNHGEPQDAGLQKMVRLIQTRN
RDRGPVAI

Download         Length: 267 bp

>AT59829 NZ_CP014007:857852-858118 [Kosakonia oryzae]
ATGGATATTAACAACAAAGCCCGTATCCACTGGGCGTGCCGCCGTGGAATGCGTGAACTCGACATCTCAATAATGCCTTT
TTTCGAACATGAGTACGACACGCTGAGCGATGATGACAAACAGCTGTTTGTTCGTCTGCTGGAAAGTGACGATCCTGATT
TATTCAACTGGTTAATGAATCATGGAGAGCCTCAGGACGCGGGGTTACAAAAAATGGTGCGGTTAATCCAGACACGGAAT
CGGGATCGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References