Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1865494..1865644 | Replicon | chromosome |
| Accession | NZ_CP013990 | ||
| Organism | Leclercia adecarboxylata strain USDA-ARS-USMARC-60222 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1865530..1865632 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1865494..1865644 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APT61_RS08655 | 1861970..1862632 | - | 663 | WP_032611910.1 | exodeoxyribonuclease X | - |
| APT61_RS08660 | 1862657..1863313 | - | 657 | WP_059307640.1 | carbon-nitrogen hydrolase family protein | - |
| APT61_RS08665 | 1863421..1863651 | - | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
| APT61_RS08670 | 1863787..1864161 | + | 375 | WP_059307641.1 | CopC domain-containing protein YobA | - |
| APT61_RS08675 | 1864163..1865035 | + | 873 | WP_032611902.1 | copper homeostasis membrane protein CopD | - |
| APT61_RS08680 | 1865050..1865388 | + | 339 | WP_032611900.1 | YebY family protein | - |
| - | 1865494..1865644 | - | 151 | - | - | Antitoxin |
| - | 1865530..1865632 | + | 103 | - | - | Toxin |
| APT61_RS08685 | 1865789..1866736 | - | 948 | WP_059307642.1 | VirK/YbjX family protein | - |
| APT61_RS08690 | 1866915..1867559 | + | 645 | WP_059307643.1 | protein-serine/threonine phosphatase | - |
| APT61_RS08695 | 1867560..1867751 | - | 192 | WP_032611549.1 | YebW family protein | - |
| APT61_RS08700 | 1867855..1868094 | - | 240 | WP_032611546.1 | YebV family protein | - |
| APT61_RS08705 | 1868198..1869742 | - | 1545 | WP_082697324.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T59778 NZ_CP013990:1865530-1865632 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT59778 NZ_CP013990:c1865644-1865494 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
