Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3961251..3961522 | Replicon | chromosome |
| Accession | NZ_CP013952 | ||
| Organism | Escherichia coli strain HST04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3961381..3961484 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3961251..3961522 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWH44_RS20365 | 3957806..3958468 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AWH44_RS20370 | 3958492..3959148 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AWH44_RS20375 | 3959250..3959480 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AWH44_RS20380 | 3959619..3959993 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AWH44_RS20385 | 3959997..3960869 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| AWH44_RS20390 | 3960882..3961223 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3961251..3961522 | - | 272 | - | - | Antitoxin |
| - | 3961381..3961484 | + | 104 | - | - | Toxin |
| AWH44_RS20395 | 3961619..3962275 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AWH44_RS20400 | 3962276..3962467 | - | 192 | WP_000457842.1 | YebW family protein | - |
| AWH44_RS20405 | 3962572..3962808 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AWH44_RS20410 | 3962926..3964365 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T59663 NZ_CP013952:3961381-3961484 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT59663 NZ_CP013952:c3961522-3961251 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
