Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1614764..1614932 | Replicon | chromosome |
| Accession | NZ_CP013940 | ||
| Organism | Cronobacter malonaticus LMG 23826 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1614826..1614929 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1614764..1614932 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK66_RS07590 | 1609915..1611978 | + | 2064 | WP_007775903.1 | oligopeptidase B | - |
| AFK66_RS07595 | 1611975..1612637 | - | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| AFK66_RS07600 | 1612710..1612940 | - | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| AFK66_RS07605 | 1613087..1613461 | + | 375 | WP_007775897.1 | CopC domain-containing protein YobA | - |
| AFK66_RS07610 | 1613466..1614335 | + | 870 | WP_007775896.1 | copper homeostasis membrane protein CopD | - |
| AFK66_RS07615 | 1614350..1614688 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 1614764..1614932 | - | 169 | - | - | Antitoxin |
| - | 1614826..1614929 | + | 104 | - | - | Toxin |
| AFK66_RS22605 | 1615157..1615717 | + | 561 | WP_032968251.1 | hypothetical protein | - |
| AFK66_RS07625 | 1615671..1616006 | + | 336 | WP_007775885.1 | hypothetical protein | - |
| AFK66_RS07630 | 1616801..1617445 | + | 645 | WP_023898529.1 | metallophosphoesterase | - |
| AFK66_RS07635 | 1617446..1617637 | - | 192 | WP_004386675.1 | YebW family protein | - |
| AFK66_RS07640 | 1617762..1618001 | - | 240 | WP_004386676.1 | YebV family protein | - |
| AFK66_RS07645 | 1618114..1619556 | - | 1443 | WP_007775872.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T59617 NZ_CP013940:1614826-1614929 [Cronobacter malonaticus LMG 23826]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT59617 NZ_CP013940:c1614932-1614764 [Cronobacter malonaticus LMG 23826]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
